Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41580 364 / 2e-114 RING/U-box superfamily protein (.1) AT1G08910 290 / 4e-86 EMB3001 zinc ion binding;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032307 [exp] 1178 / 0 AT5G41580 389 / 4e-124 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133000 [exp] 503 / 4e-166 AT5G41580 466 / 1e-151 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF02891 [flax] [poplar] zf-MIZ MIZ/SP-RING zinc finger
Representative CDS sequence Show only first row Show all	>Lus10024682 pacid=23161636 polypeptide=Lus10024682 locus=Lus10024682.g ID=Lus10024682.BGIv1.0 annot-version=v1.0 ATGGCCGGAAACGTGGCGCCACCGCCGCAGGCTCCGGGCGCCCCTCTGACGGTAGCAAACCAGGCCACACTATCGGCATCAATGGTAAATTCTTTCAGAG TGATAGCAGTAGTCGACCGTCTAGCCCTGCATCTGCAACCTGGCCGAGAAAATAACTCCAGCGAGTTCTTCGGTCTTTGCCTCTCCCTCGCACGGGGCAT TGATTATGCTGTGGCAAACAATGAGCCACCATCCAAAGTTCAAGAGCTGCCTTTGCTGTTGAAACAGGTATGCGTTCGCAGGAGCGATCCCTTATTAGAG GCAGCTATAATGGTGCTGATGATTTCTGTCAAGAATGCTTGTAAAGTTGGATGGTTTTCAGTCCAAGAGACTCAAGAACTTATTTCTCTGGCTAGCGAGA TTGCCAACAAGTTTTGCAGTCCTGGAGATATTAATGATGCCGCTGGTTATTCTCAAACTGCTGTCTCAACAGTTTTCTCCAGGTACTACCCTCGGATGAC AATGGGCGCGATTCTTGCTTCCCTTGAAGTGAAGCCTGGTTTCGGTGCACATGTGCTGGATTTTCAAATTTCAAAGAAGTTGAACCATTCTCCACATGAA AAAATATTACTGTTTGTAGCCCAGACAGATAATCTAGACACATCAGCATGTATTGTAAGCCCACAGCAAGTGAATTTTCTTGTGAATGGGAAAGGAGTCG ACAAAAGAACCAACGTGCAAATGGATACTGGCCCACAATTACCAACTAATGTGACGGGAATGCTAAAATACGGAACAAATCTTCTTCAAGCTGTTGGCAC CTTCAATGGTAATTATGTAATACTTATCGCTTTCGTAAGCACAACGACACTACCTGATCCTCCAGTGCTGACAGATTATGTCCAGTCAGATCGCACTTCG TTAGATCCAGCGTTTCATCCAAACTTTTCCTCTCGTGTTGCAGATTCTGACATCATTGAGGGACCTTCACGAATATCACTCAACTGTCCCATAAGCTTTT CAAGAATTAAAATTCCAGTGAAAGGGATTCTGTGCAAACATCTTCAGGTATTGAAAGAAGTTGGAGATAGTATCACTCATGTAAATATATCAGCTGATGG ATCGTGGAAGGCTATCACAGATGCTAATGAAAATGAAGGAGTCACGCCTGTAAGACATTCCCTGGGAGAAACTCCTGAACAGCCAGATTCTAATGCTGAG TCACCTGCCACTCCCATGATTTTGGATCTTACTGAAGGTGGCGATGATCTGATGGATGAGTTATTAAGCAATTGGGATACTGTTGAAAGGAAACCTTCTC AGGCTTCTTCTCCTGGCCAAACTCCGAATCAAGAAAACCCCGCTTCTCAAATCGGAGATTGGGCCCATTTGATCTATCCTTCTGGGTCTGCTGCCACGTC TGGGTTCGGATCAGGCACCCAATTCCCAAATGCAGTTTCTCAGACGTCTGCGATGATAACTGATGCAGTCGAGAACCAATCTCACAGCAATATCGATGCA GGTTCTCAGTTTGCTCCCCTTGTCAGTAATTATGCCGGGTTGCAGATGCAGCAACTAGGTATACCTGTTCATAGAGTCCCAACAGCAGTCCAAGCCCTCC CGGCCCAAAGTCAAAGTCCATTTCTGCCAAGGACGAGTACTAGTTATGTGAACTCCGTCAGTTCCAACTCTTCTCCATCAGTGACGCTAAGTTCAAATGG TTTTAGTACGCCCCCCGTGCAGCGATTCTCAAGATCCCATTATGATTTTCCTCGCGTCTCTAACCCGGCTTCTTCTGCCCCTCGTCAAACTCTACCCCAG AACTTTAACAATCAATTTAGGTCACCTTCCTACGGTCTAGCTCCTCGTTCGACTCCTGTTCCAACTACAGGTCCACAGAGAGCATCACCTGTGAGTCTCC GGATGCCTTCTGCAAGCCATCCCACCGCCAGGTCATCATCTCCTCTGGCACCCTTCCAAGGGACACAAGCCATGGATGGGGCTGCTGCCCGGCAAGCAGC AAATATGCATAGACAGCCACTGGTACAATCTCGATCTACTTATACTTTGAATCCTGATATTAGCAGGACTCCAGCAGCTGAGCTGAGGGGTAATGTAACA TCCCCTCAGCCAACCACGGCTGCGACTCCAAACTCTGATCAGAACTGGAGACCGGTTGGTAGGATGCGTGGAAGCCTGGAAGGTTGTGATCTTGCCGAGA TCAGGAACTTGGTACTCCAGTCAACCCATCAAACTTCGTCCGGGGGAGGAGGAGCAACATCGAGTCCTACGTTGTCTGATGCCACTGCACCGCCCCATCT CCGGGGTCTCTTTGGTCAGAAATAG
AA sequence Show only first row Show all	>Lus10024682 pacid=23161636 polypeptide=Lus10024682 locus=Lus10024682.g ID=Lus10024682.BGIv1.0 annot-version=v1.0 MAGNVAPPPQAPGAPLTVANQATLSASMVNSFRVIAVVDRLALHLQPGRENNSSEFFGLCLSLARGIDYAVANNEPPSKVQELPLLLKQVCVRRSDPLLE AAIMVLMISVKNACKVGWFSVQETQELISLASEIANKFCSPGDINDAAGYSQTAVSTVFSRYYPRMTMGAILASLEVKPGFGAHVLDFQISKKLNHSPHE KILLFVAQTDNLDTSACIVSPQQVNFLVNGKGVDKRTNVQMDTGPQLPTNVTGMLKYGTNLLQAVGTFNGNYVILIAFVSTTTLPDPPVLTDYVQSDRTS LDPAFHPNFSSRVADSDIIEGPSRISLNCPISFSRIKIPVKGILCKHLQVLKEVGDSITHVNISADGSWKAITDANENEGVTPVRHSLGETPEQPDSNAE SPATPMILDLTEGGDDLMDELLSNWDTVERKPSQASSPGQTPNQENPASQIGDWAHLIYPSGSAATSGFGSGTQFPNAVSQTSAMITDAVENQSHSNIDA GSQFAPLVSNYAGLQMQQLGIPVHRVPTAVQALPAQSQSPFLPRTSTSYVNSVSSNSSPSVTLSSNGFSTPPVQRFSRSHYDFPRVSNPASSAPRQTLPQ NFNNQFRSPSYGLAPRSTPVPTTGPQRASPVSLRMPSASHPTARSSSPLAPFQGTQAMDGAAARQAANMHRQPLVQSRSTYTLNPDISRTPAAELRGNVT SPQPTTAATPNSDQNWRPVGRMRGSLEGCDLAEIRNLVLQSTHQTSSGGGGATSSPTLSDATAPPHLRGLFGQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41580			RING/U-box superfamily protein...		Lus10024682 [exp]	0	1
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	1.0	0.8995
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10035958 [exp]	3.2	0.8694
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	6.6	0.8617
AT2G17030			F-box family protein with a do...		Lus10022650 [exp]	6.9	0.8158
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	6.9	0.8576
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10023537 [exp]	7.7	0.8239
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	8.8	0.8665
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10019754 [exp]	8.9	0.8232
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	9.2	0.8346
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003075 [exp]	9.4	0.8348

Compare expression of checked genes

Lus10024682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.