Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64060 649 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT4G11230 525 / 2e-172 Riboflavin synthase-like superfamily protein (.1) AT5G47910 473 / 7e-153 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G51060 470 / 5e-152 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT1G09090 451 / 3e-145 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT4G25090 445 / 5e-143 Riboflavin synthase-like superfamily protein (.1.2) AT1G19230 444 / 6e-142 Riboflavin synthase-like superfamily protein (.1.2) AT5G07390 437 / 2e-139 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT5G60010 420 / 7e-133 ferric reductase-like transmembrane component family protein (.1) AT3G45810 392 / 5e-122 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028755 [exp] 1212 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10032308 [exp] 871 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10029896 [exp] 730 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10020644 [exp] 679 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10017527 [exp] 670 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10016739 [exp] 478 / 2e-162 AT5G51060 570 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10017850 [exp] 492 / 6e-161 AT1G64060 681 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10034890 [exp] 489 / 1e-158 AT1G19230 1181 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10033423 [exp] 486 / 2e-158 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G098300 [exp] 704 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.003G133300 [exp] 693 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.012G111600 [exp] 493 / 1e-160 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.015G109800 [exp] 491 / 1e-159 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.006G137300 [exp] 487 / 4e-158 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.003G159800 [exp] 486 / 7e-158 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.001G070900 [exp] 479 / 5e-155 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.005G026200 [exp] 472 / 8e-153 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.006G097200 [exp] 389 / 1e-121 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 389 / 1e-121 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0220 [flax] [poplar] EF_hand PF08414 [flax] [poplar] NADPH_Ox Respiratory burst NADPH oxidase CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10024683 pacid=23161549 polypeptide=Lus10024683 locus=Lus10024683.g ID=Lus10024683.BGIv1.0 annot-version=v1.0 ATGAAGCACGAGAGGCGATGGCGATCGGATTCCTTACCTGGAAAGGGCAGAGCAGCTGACAGCAGTAGCAGCAGCAGCGCGGGGACTTCTCCGGCGAGCG ATGCGAGAAGCTCGACAGCGGCAGCGACGGAGGATTTCGTCGAGGTCACGCTCGATTTGCAGGACGACGATACGATTATACTCCGAAGCGTTGAGCCGGC GACGGTGATCAATATCGGCGGAGAGGAAGGCGATCACGAGAGCGGCGGAAGCGAGCTGTTACCTCGTTCGACTCCTACTTCCGCTCCGACTTCCAGATCT CCTACGATCAAGCGAAGCTCGTCAAACAAGCTGCGGCAGTTCTCGCAGGAGCTGAAGGCGGATGCAGTGGCGAAGGCGAGACAATTCTCGCTGGATGTGA GAGCTGAGCTACGTAGGTTCTCGAGGAGCCGCGGAGGAACAGCGTCGCGTAATAATAATCCGGAGAACAACAACAATGGCGGTGCTGTATTTGAGTCCGC GTTGGCTGCTCGAGCTCTGAGGAAGCAGCGAGCTCAGCTCGATCGGACCAGGACCAGCGCTCACAAAGCCCTGCGGGGTCTCAAGTTCATCAGTAAGAGG AAATCTCAAGGCGTCGAGGCGTGGAATGAAGTGGCCAGCAACTTCGATAAGCTCGCCGTGGACGGTTATCTCCAACGCGCAGATTTCGCGCAATGCATAG GGATGAGAGACTCTAAAGAGTTTGCACTCGAACTGTTCGACGGATTGAGCAGGAGAAGGAGGTTGAAGGTTGAGAAGCTTAGCAAGGAGGAGTTGTACGA ATTCTGGGCACAAATCACCGATGACAGCTTCGACTCACGGCTTCAGATCTTCTTCGACATGGTGGACAAGAATGAAGATGGTAGACTCACAGAGGAAGAC GTAAAAGAGATTATTATGTTAAGTGCTTCGGCGAATAAACTATCAAGATTGAAGGAACAAGCGGAAGAATATGCAGCTTTGATCATGGAAGAGTTGGACC CTGAAGGACTTGGCTACATCGAGCTATGGCAACTGGAGACGCTTCTTCTACAAAAGGACACATATCAAAACTACAGTCAAGCAATGAGCTACACAAGCCA AGCCTTGAGCCAGAACTTGCAAGGGCTAAGAATGAGAAGCCCAATAAGGAGGATGAGCACAAACTTTGTCTACTTCTTGGAAATGAACTGGAAGAGGATC TGGGTGATATCCTTATGGATCATGATCATGATTGGACTGTTCGCATGGAAATTCTATCAGTATAAGCAGAAAGCTGCCTTCAATGTCATGGGTTACTGTC TCCTGACGGCAAAGGGTGCTGCGGAAACTCTGAAGTTCAACATGGCCCTCATTCTGCTTCCCGTGTGTAGAAACACCATCACTCGGCTCAGGTCCACACG TCTGGCTTATGTTTTCCCTTTCGATGACAACATAAACTTCCACAAGACTATTGCGGCAGCAATCGTAGTTGGCGTCATCCTTCACGTTGGAAACCACCTT GCCTGTGATTTCCCGAGGCTCGAAAGCGCTTCTGCCCATGACTACGATCTGTATCTCAGAAAAGACTTCGGAGACCATAAACCCAGTTACATGAAATTAG TTAGGGGGGTAGAGGGCGTGACTGGAATCCTGATGACATGGATGTACCTCTCTGTTCCTGTGCTGCTTTACGCCGGAGAAAGAGCCCTCAGGTTCTTCCG CTCTGGCTCCCATTCAGTCCGGCTTTTGAAGGTTGCAATTTACCCTGGCAACGTACTCACATTGCAAATGTCAAAGCCTACTCAATTCCGGTACAAGAGC GGGCAGTACATGTTCGTTCAGTGCCCTGCTGTTTCTCCATTTGAATGGCACCCATTCTCGATAACTTCAGCTCCTGGAGATGACTACCTTAGCGTCCATA TCCGACAGCTAGGCGATTGGACACAAGAACTGAAAAGGGTATTCTCTGAGGTCTGCGAGCGTCCTATTTCTGGCAAAAGTGGCCTTCTTAGAGCTGATGA AACCACCAAGAGAAGTTTGCCGAAGCTGTTAATAGATGGGCCGTACGGTGCCCCAGCGCAAGACTACAAGAAATACGACGTCTTGTTACTCGTAGGGTTG GGTATCGGAGCAACGCCTTTCATCAGCATTCTCAAAGACTTGCTTAACAACATCGTCAAGATGGAGGAGATGGCTGATTCCGTAGCGGACTCCAGCAGAG GTTCAGATCAGCTGAGCTTCACGAGCACCACCGACTTTATGAGACGGAAGAAGGCATTGATAAAAACCACAAACGCTTACTTCTACTGGGTAACAAGGGA ACAAGGCTCATTCGATTGGTTCAAAGGCGTGATGAACGAGATTGCCGACCTTGATCAGAGGGGGGTACTTGAGATGCACAACTACTTAACCAGCGTATAC GAGGAAGGGGACGCGAGATCGACTCTGATAACGATGGTGCAAGCATTGAACCATGCCAAAAACGGAGTGGACATTGTCTCGGGGACTAGGGTGCGAACTC ATTTCGCGAGGCCTAACTGGAAGAAGGTGCTCTCAAAACTAAGCTCAAAGCACTGTAATGCAAGGATAGGGGTATTCTACTGTGGGGCACCAGTTCTGGC CAACGAACTCGGAAAGCTATGCTACGAGTTCAACCAGAAGGGTTCTACCAAGTTCGAATTCCACAAGGAGCATTTCTAG
AA sequence Show only first row Show all	>Lus10024683 pacid=23161549 polypeptide=Lus10024683 locus=Lus10024683.g ID=Lus10024683.BGIv1.0 annot-version=v1.0 MKHERRWRSDSLPGKGRAADSSSSSSAGTSPASDARSSTAAATEDFVEVTLDLQDDDTIILRSVEPATVINIGGEEGDHESGGSELLPRSTPTSAPTSRS PTIKRSSSNKLRQFSQELKADAVAKARQFSLDVRAELRRFSRSRGGTASRNNNPENNNNGGAVFESALAARALRKQRAQLDRTRTSAHKALRGLKFISKR KSQGVEAWNEVASNFDKLAVDGYLQRADFAQCIGMRDSKEFALELFDGLSRRRRLKVEKLSKEELYEFWAQITDDSFDSRLQIFFDMVDKNEDGRLTEED VKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDTYQNYSQAMSYTSQALSQNLQGLRMRSPIRRMSTNFVYFLEMNWKRI WVISLWIMIMIGLFAWKFYQYKQKAAFNVMGYCLLTAKGAAETLKFNMALILLPVCRNTITRLRSTRLAYVFPFDDNINFHKTIAAAIVVGVILHVGNHL ACDFPRLESASAHDYDLYLRKDFGDHKPSYMKLVRGVEGVTGILMTWMYLSVPVLLYAGERALRFFRSGSHSVRLLKVAIYPGNVLTLQMSKPTQFRYKS GQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEVCERPISGKSGLLRADETTKRSLPKLLIDGPYGAPAQDYKKYDVLLLVGL GIGATPFISILKDLLNNIVKMEEMADSVADSSRGSDQLSFTSTTDFMRRKKALIKTTNAYFYWVTREQGSFDWFKGVMNEIADLDQRGVLEMHNYLTSVY EEGDARSTLITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLANELGKLCYEFNQKGSTKFEFHKEHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60010			ferric reductase-like transmem...		Lus10024683 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10037150 [exp]	1.7	0.7750
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10032308 [exp]	4.9	0.8234
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10013502 [exp]	20.6	0.7095
AT2G36380		ABCG34, PDR6, A...	ATP-binding cassette G34, plei...		Lus10023879 [exp]	20.9	0.7790
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10043357 [exp]	33.6	0.7464
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10037354 [exp]	44.2	0.7173
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	54.0	0.7173
AT5G67200			Leucine-rich repeat protein ki...		Lus10018254 [exp]	57.4	0.6952
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	58.3	0.7027
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10002930 [exp]	61.0	0.7331

Compare expression of checked genes

Lus10024683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.