Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G42660	446 / 8e-140		Protein of unknown function (DUF616) (.1)
AT2G02910	202 / 2e-55		Protein of unknown function (DUF616) (.1)
AT1G34550	197 / 2e-51	EMB2756	EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1)
AT1G53040	192 / 2e-51		Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2)
AT4G09630	189 / 4e-49		Protein of unknown function (DUF616) (.1)
AT4G38500	179 / 4e-47		Protein of unknown function (DUF616) (.1)
AT1G28240	177 / 8e-46		Protein of unknown function (DUF616) (.1)
AT5G46220	126 / 1e-29		Protein of unknown function (DUF616) (.1)
AT5G42655	96 / 3e-22		Disease resistance-responsive (dirigent-like protein) family protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10032311 [exp]	536 / 1e-170	AT5G42660	574 / 0.0	Protein of unknown function (DUF616) (.1)
Lus10016294 [exp]	482 / 5e-152	AT5G42660	603 / 0.0	Protein of unknown function (DUF616) (.1)
Lus10032863 [exp]	469 / 4e-147	AT5G42660	594 / 0.0	Protein of unknown function (DUF616) (.1)
Lus10032310 [exp]	229 / 3e-68	AT5G42655	125 / 2e-37	Disease resistance-responsive (dirigent-like protein) family protein (.1)
Lus10036741 [exp]	206 / 1e-56	AT2G02910	545 / 0.0	Protein of unknown function (DUF616) (.1)
Lus10037186 [exp]	206 / 3e-55	AT2G02910	546 / 0.0	Protein of unknown function (DUF616) (.1)
Lus10009419 [exp]	191 / 8e-50	AT1G34550	753 / 0.0	EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1)
Lus10028702 [exp]	191 / 9e-50	AT1G34550	750 / 0.0	EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1)
Lus10001446 [exp]	187 / 5e-49	AT1G28240	706 / 0.0	Protein of unknown function (DUF616) (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.002G149900 [exp]	457 / 3e-143	AT5G42660	633 / 0.0	Protein of unknown function (DUF616) (.1)
Potri.010G094000 [exp]	215 / 1e-59	AT2G02910	565 / 0.0	Protein of unknown function (DUF616) (.1)
Potri.019G084100 [exp]	197 / 7e-52	AT1G34550	707 / 0.0	EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1)
Potri.011G053000 [exp]	192 / 5e-51	AT1G28240	775 / 0.0	Protein of unknown function (DUF616) (.1)
Potri.004G044100 [exp]	189 / 9e-50	AT1G28240	779 / 0.0	Protein of unknown function (DUF616) (.1)
Potri.013G113700 [exp]	189 / 5e-49	AT1G34550	708 / 0.0	EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1)
Potri.001G399800 [exp]	183 / 2e-48	AT1G53040	574 / 0.0	Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2)
Potri.011G119300 [exp]	182 / 8e-48	AT1G53040	588 / 0.0	Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2)
Potri.009G138000 [exp]	179 / 4e-47	AT4G38500	725 / 0.0	Protein of unknown function (DUF616) (.1)
Potri.004G177600 [exp]	178 / 7e-47	AT4G38500	750 / 0.0	Protein of unknown function (DUF616) (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0650 [flax] [poplar]	AOC_barrel	PF03018 [flax] [poplar]	Dirigent	Dirigent-like protein
CL0650 [flax] [poplar]		PF04765 [flax] [poplar]	DUF616	Protein of unknown function (DUF616)

Representative CDS sequence

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>Lus10024684 pacid=23161675 polypeptide=Lus10024684 locus=Lus10024684.g ID=Lus10024684.BGIv1.0 annot-version=v1.0

ATGTACGCCAACAACAGCGTCTCGATTCCTGTCTCCGACGACGACGAATCAGACGAGCTCCTCAGTCGGAAGCGCGCCAGAGTACTGCGGAGGAAGCGCA

AGAAGCCGTTCTTCCTCAAGCGCTTCGTTAGGTTTCTGGTGAAGTACTGGGCGCTATTGATCTTCGTCCCCGCTGTCGTTCTGCTCTGCTACGAGGCTTC

CAAACTTGGCAATGAGCGGCCGCCGCCGGAAACTATGGACGACGATGACGATCTCGATTTGTTCGCCGCACATGGTACGGAACTGGATCCGGAGCTCGAT

CCAATATTCAAGAAGAAGGTTACTTCTCATCCCAATTTGAATCAAATGGATCCCACTACCCGAATGGTTGACGGCGTAAGAGAACCTTGTTTGAAGCTCC

TACCATCAGATGAACTTGAACTTCTGGATGTTCCCAGTAGTGGTGGAGGTATCGACAGTCCTGTTAAGAATGTTATCTACTTGTCAGAGAAAGATGTTGT

ACCGGATTCTTCGGCTACTCGCAGGTCGAAACGAATCAAATTCAATCCATTCACGGGATACCCGAGTCTTGAAGATAGATCCAAGAGCTTTATGGTGAAC

CAGGAGGATGATGCTGCAGTACATTGTGGATTTTTCAGTGAAAATGCAGGGTTTAAGATATCTGAAGCGGATAAGAGTTACATGGAGAGTTGCAAAGTGG

TGGTTTCCACTTGCGCTTTCGGTGGCGGGGATGATCTTTACCAGCCCATTGGAATGTCAAATGCTTCAGCACATAAGGTTTGCTATGTTGCATTTTGGGA

TGATATTACTCTGGCTGCTCAGGAGACGGCTGGGCACACGATTGGGAACGATAAATTCATTGGCAAGTGGCGCATCGTGCTAGTGGAGGACCTTCCGTTT

GTGGATCAAAGATTAAATGGTAAAATCCCAAAGGTATTGCAACTCCTCCTGACACTGGCTTTCTTGTATATATGTGTGATATTTAGCACTAAAGAAAGAT

TAATTGCTTTTCCTTCTGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAAGTTGTGGTTTCCTCTTGCGCTTTCGGTGGCGGGGATGATCTTTACCAGCCCATTGGAATGTCAAATGC

TTCAGCACATAAGGTTTGCTATGTTGCATTTTGGGATGATATTACTCTGGCTGCTCAGGAGACGGCTGGGCACACGATTGGGAACGATAAATTCATTGGC

AAGTGGCGCATCGTGCTAGTGGAGGACCTTCCGTTTGTGGATCAAAGATTAAATGGTAAAATCCCAAAGATGTTGGGACATCGGCTATTTCCTAATGCGA

AATACTCAATATGGGTAGACTCGAAGTCTCAATTCAGGAGGGACCCTCTGGGAGTTCTGGAAGCACTTCTTTGGCGCACCAAATCTGTGTTAGCAATCTC

AGAACACGGAGCTCGCAGCAGTGTGTATGATGAGGCCAAGGCTGTGGTCGATAAACACAAAGCCAGACCAGAAGAGGTCGAGGTGCAAATGACTCAGTAT

AAGAAAGACGGTATGCCTGAGGACAAAAGATTCAACGGAAAGAAAGCTCTGAATGAAGCTTCGATCATAGTGAGGGAGCACACACCAATCACCAACCTGT

TCATGTGCATCTGGTTCAACGAAGCGGTGCGGTTCACTTCAAGAGACCAACTTAGCTTCCCGTACGTGCTATGGCGACTCAAAGTGCTGAGAGATGTCAA

CATGTTCCCTGTTTGTACTCGTAAAGACCTTGTTAATAGTATCGGCCATCTACGCAAGGCCAAACCTTCCATCAAAAGAACCATTTCCAGTACGGTTGAT

GATGTTGGCATACAAGGCGACGCACTGCAGAACTTTGCTGGTGTGCTCCAGAAACAGATCATGGTCAGTTCTGTTTACAAGATTTCAAACTACTCCCTCG

GATCACCCCGTGCCAATTACCCGCATTGGTTTGCCTTGACTTCTGCTACGCTGTTCAACCTCCAGCCTCCTTCGGACCCTCTTTTTGCACCGGAACTGCT

TGAATATGTTCCCTTAGCGGATTTCCCCTCCCGAATGGGGTCGTGCCCTTACTTGACAGGTCAGCCTTCTCACTTCGCTTACATTATTTTCACTTTTTCT

GCGTTAACTGTTGTCTTGGTTATGCTTGCCGGTTGTGGTTGTTCCGCCTGCCGTATGATCATTTTCTGCGTCTCTGTACTCATTTCAATTCTCGTCGTTT

TCCTTCTTGCTTTCCTTTCCCCAATTCCTCACCACACTCACAACACCAAGCCCTGGGTCGCTCTCTCATTGTACATCCAGCAACCACAAGTCTCGCCATC

CACCGCCCCTGCCGGCAGGGGCGGCGGGGGAGGAGGAGCCTTCGTATTCCACCGATCGTTGACTGAAGGTCCGGAGAACTCGTCCAGAGTGGTGGGGAAG

GCGCAGGGTTTCATAATCCCCGTTGAGACATTTGCCGATTCGGCTTTTAACGTCGTATACCTAACTTTCCGTACGCCGGAGTTTTCGGGGAGCTTGAGCG

TCCAGGCGAAAAACGTGGCCGCGGCGGGGGGGAGAGACGAGGGAAGGCAGCTGGCGGTGGTTGGGGGAACTGGGTCGTTCGCGTTTGCTCGCGGATTTGC

CATCTTCTTCGCAGGAGACGGCGGTGACAGGGATCGGCCTTGTCAGTTGAAGCTTCAGCTAAGATTTCCCAATCGATCCCAAACTATATTTCCTGCGGGT

TGA

AA sequence

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>Lus10024684 pacid=23161675 polypeptide=Lus10024684 locus=Lus10024684.g ID=Lus10024684.BGIv1.0 annot-version=v1.0

MYANNSVSIPVSDDDESDELLSRKRARVLRRKRKKPFFLKRFVRFLVKYWALLIFVPAVVLLCYEASKLGNERPPPETMDDDDDLDLFAAHGTELDPELD

PIFKKKVTSHPNLNQMDPTTRMVDGVREPCLKLLPSDELELLDVPSSGGGIDSPVKNVIYLSEKDVVPDSSATRRSKRIKFNPFTGYPSLEDRSKSFMVN

QEDDAAVHCGFFSENAGFKISEADKSYMESCKVVVSTCAFGGGDDLYQPIGMSNASAHKVCYVAFWDDITLAAQETAGHTIGNDKFIGKWRIVLVEDLPF

VDQRLNGKIPKVLQLLLTLAFLYICVIFSTKERLIAFPSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKVVVSSCAFGGGDDLYQPIGMSNASAHKVCYVAFWDDITLAAQETAGHTIGNDKFIG

KWRIVLVEDLPFVDQRLNGKIPKMLGHRLFPNAKYSIWVDSKSQFRRDPLGVLEALLWRTKSVLAISEHGARSSVYDEAKAVVDKHKARPEEVEVQMTQY

KKDGMPEDKRFNGKKALNEASIIVREHTPITNLFMCIWFNEAVRFTSRDQLSFPYVLWRLKVLRDVNMFPVCTRKDLVNSIGHLRKAKPSIKRTISSTVD

DVGIQGDALQNFAGVLQKQIMVSSVYKISNYSLGSPRANYPHWFALTSATLFNLQPPSDPLFAPELLEYVPLADFPSRMGSCPYLTGQPSHFAYIIFTFS

ALTVVLVMLAGCGCSACRMIIFCVSVLISILVVFLLAFLSPIPHHTHNTKPWVALSLYIQQPQVSPSTAPAGRGGGGGGAFVFHRSLTEGPENSSRVVGK

AQGFIIPVETFADSAFNVVYLTFRTPEFSGSLSVQAKNVAAAGGRDEGRQLAVVGGTGSFAFARGFAIFFAGDGGDRDRPCQLKLQLRFPNRSQTIFPAG

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description	Locus	MR	r
AT5G42660			Protein of unknown function (D...	Lus10024684 [exp]	0	1
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)	Lus10012109 [exp]	5.4	0.8209
AT4G22780		ACR7	ACT domain repeat 7 (.1)	Lus10006662 [exp]	5.5	0.8654
AT5G42660			Protein of unknown function (D...	Lus10032311 [exp]	6.0	0.8627
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...	Lus10004724 [exp]	6.9	0.8598
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...	Lus10001786 [exp]	7.1	0.8243
AT2G25270			unknown protein	Lus10038102 [exp]	7.6	0.8665
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...	Lus10029000 [exp]	7.7	0.8636
AT5G26667		PYR6	P-loop containing nucleoside t...	Lus10031611 [exp]	7.9	0.8625
AT5G56350			Pyruvate kinase family protein...	Lus10010329 [exp]	8.4	0.8631
AT5G05340			Peroxidase superfamily protein...	Lus10029065 [exp]	9.5	0.8308

Lus10024684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10024684 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10024684 coexpression network