Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23630 227 / 2e-74 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT2G46170 226 / 3e-74 Reticulon family protein (.1.2) AT1G64090 224 / 1e-73 RTNLB3 Reticulan like protein B3 (.1.2) AT4G11220 220 / 1e-71 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT5G41600 214 / 1e-69 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT3G61560 202 / 3e-65 Reticulon family protein (.1.2) AT4G01230 165 / 2e-50 Reticulon family protein (.1) AT3G10260 136 / 2e-39 Reticulon family protein (.1.2.3) AT3G18260 107 / 2e-28 Reticulon family protein (.1) AT3G10915 83 / 3e-19 Reticulon family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032313 [exp] 362 / 2e-127 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10017533 [exp] 249 / 4e-83 AT1G64090 303 / 9e-104 Reticulan like protein B3 (.1.2) Lus10041080 [exp] 233 / 5e-77 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2) Lus10036405 [exp] 231 / 3e-76 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2) Lus10028753 [exp] 241 / 1e-73 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10014948 [exp] 219 / 2e-71 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10027548 [exp] 219 / 2e-71 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10027546 [exp] 218 / 5e-71 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10038833 [exp] 217 / 7e-71 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097700 [exp] 263 / 5e-89 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 242 / 7e-81 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 230 / 7e-76 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 229 / 2e-75 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 221 / 2e-72 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.015G027300 [exp] 213 / 3e-69 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.002G055600 [exp] 155 / 1e-46 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.013G160900 [exp] 144 / 1e-42 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.005G206800 [exp] 142 / 9e-42 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.012G054100 [exp] 102 / 2e-26 AT3G18260 238 / 6e-80 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10024687 pacid=23161623 polypeptide=Lus10024687 locus=Lus10024687.g ID=Lus10024687.BGIv1.0 annot-version=v1.0 ATGACTGAGCATCACGAGAAGAAGGAGGACTCGTTGGCGGAGTCTCTGATGGACAAGATATCGGAGAAGATCCACGGCGGCGACGATTCGTCTTCTGACA CCGTGCACTACGACAATACGAAGAAGTCAGCGCCGGATTCTCCGTCGTCGATGAAGTCTAAAATCTACCGCCTCTTCGGCCGCGAGCAGCCGGTTCACAA GGTTCTTGGCGGTGGCAAACTTGTGATACTGATGAATATTGCTTTATTGAACAGCTGCGGATGTTTTCCTCTGGAGGGACAAGAAGATTTCAACAGGAGG TCTTGGTGGGGGAACTGCAGCATGGGTGCTAGGTCTCCACCACGCATTCCAGAGGTTCACATCCCAGAGGACCCTGTTCTACAACTTGCTTCTGCTCTTA GGATTGAGATCAATCGGGGCTTGGTTTCTCTTCGTGATATTGCATCCGGAAGGGAGTTGAAGAAGTTCCTTGTGGTTATTGCTGGTTTGTGGTTCTTGTC TATAGTAGGAAGCTGGTGCAACTTCTTGACTCTGTTCTATATTGTTTTTGTGCTGCTCCATACGGTACCAGTGGTCTATGAGAAGTACGAAGACAAGGTC GATGCATTCGGTGAGAAGGCGTGGATCGAGATCAAGAAACAGTATGCAGTGTTCGATGAGAAGGTGCTAAGTAAGATCCCAAAAGGCTCATTGAAGGCCA AGAAGAAGGATTAA
AA sequence Show only first row Show all	>Lus10024687 pacid=23161623 polypeptide=Lus10024687 locus=Lus10024687.g ID=Lus10024687.BGIv1.0 annot-version=v1.0 MTEHHEKKEDSLAESLMDKISEKIHGGDDSSSDTVHYDNTKKSAPDSPSSMKSKIYRLFGREQPVHKVLGGGKLVILMNIALLNSCGCFPLEGQEDFNRR SWWGNCSMGARSPPRIPEVHIPEDPVLQLASALRIEINRGLVSLRDIASGRELKKFLVVIAGLWFLSIVGSWCNFLTLFYIVFVLLHTVPVVYEKYEDKV DAFGEKAWIEIKKQYAVFDEKVLSKIPKGSLKAKKKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10024687 [exp]	0	1
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10038451 [exp]	2.0	0.8812
AT1G15230			unknown protein		Lus10035871 [exp]	2.8	0.8215
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10018640 [exp]	3.9	0.8254
AT1G61040		VIP5	vernalization independence 5, ...		Lus10018476 [exp]	4.5	0.8311
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	8.5	0.7840
AT4G05400			copper ion binding (.1.2)		Lus10027072 [exp]	9.5	0.7853
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10024896 [exp]	10.0	0.7981
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Lus10036708 [exp]	11.6	0.7805
AT1G17070			GC-rich sequence DNA-binding f...		Lus10002252 [exp]	15.7	0.7456
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10029934 [exp]	16.7	0.7513

Compare expression of checked genes

Lus10024687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.