Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003089 [exp] 44 / 3e-05 AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10032314 [exp] 0 / 1 ND / Lus10024691 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024688 pacid=23161644 polypeptide=Lus10024688 locus=Lus10024688.g ID=Lus10024688.BGIv1.0 annot-version=v1.0 ATGAGACTTCGGTCAGGTTTGTCGAACATTCAGTTCCTTCGAGCCTTATGTTTGAGAAATGTTCATGTGACTGATAAGATCTTTCGAGATCTGCTCGCTT ATTATCATCTACTTGAGAAGTTAGTCATAGATTCGTCTGAGGGCTTAGTTAAGGTTAATGTGGCGTCTTTGGAGTCATCCTCACTGTTGAAATTGAAGCA CTTGGAGATAGTCAACTGTATTTATGTGCTGGTGATTAAATTCCGTCCGCCAAATCTCTTAACCTTCCGTTATGATGGTGGTATAGTTGATCTTCAGTTT GACAATGTTTCGAGCCTACAGGAGATGGATCTGACGATTGAGTGGGATCTGGTCATGAAGAGGTGGAAGTTGGGTGTCAAACTCCATGCCATGTTCTTTT TTATCTTCCTACCTGAGTATGACGATGTGGAGCCCTTCAATGACGATGGTTCGTTTCAGGTGTCAAGTGTAGATCCTTGGGAGGAACTAAGACCAAGCAT CAAAGTGCTGGAGATTACTGGATTTGGTCTTGGCCCCAATAATTGTTTCTTGGAGTATGTTCTCCGACACTTCACCATGCTCGAGAAACTAATATTCGAC AGTCGCAGCAAGCCTCTTGATATGTGTATTTCCCATTGGAGATCTATGTTCCTTTCAACGGTTGAGTTTGTCGTCCTTGAAAGAAGCAAGCTCTGCAAAC GCAATTGGCACTACTTGTTGAGTCTTGTGTGTCTTCCTTTCTAA
AA sequence Show only first row Show all	>Lus10024688 pacid=23161644 polypeptide=Lus10024688 locus=Lus10024688.g ID=Lus10024688.BGIv1.0 annot-version=v1.0 MRLRSGLSNIQFLRALCLRNVHVTDKIFRDLLAYYHLLEKLVIDSSEGLVKVNVASLESSSLLKLKHLEIVNCIYVLVIKFRPPNLLTFRYDGGIVDLQF DNVSSLQEMDLTIEWDLVMKRWKLGVKLHAMFFFIFLPEYDDVEPFNDDGSFQVSSVDPWEELRPSIKVLEITGFGLGPNNCFLEYVLRHFTMLEKLIFD SRSKPLDMCISHWRSMFLSTVEFVVLERSKLCKRNWHYLLSLVCLPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024688 [exp]	0	1
AT2G18465			Chaperone DnaJ-domain superfam...		Lus10033506 [exp]	7.1	0.6201
AT5G50350			unknown protein		Lus10034861 [exp]	7.9	0.6349
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10031572 [exp]	21.9	0.6397
AT3G45330			Concanavalin A-like lectin pro...		Lus10003574 [exp]	28.6	0.5796
					Lus10013098 [exp]	49.0	0.5800
AT2G38180			SGNH hydrolase-type esterase s...		Lus10027790 [exp]	65.0	0.5750
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007958 [exp]	67.2	0.5602
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10037233 [exp]	74.6	0.5958
					Lus10007072 [exp]	87.4	0.5557
					Lus10020450 [exp]	117.5	0.5687

Compare expression of checked genes

Lus10024688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.