Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42700 97 / 8e-23 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G19184 97 / 2e-22 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 84 / 4e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G09780 46 / 3e-05 B3 REM23 Transcriptional factor B3 family protein (.1) AT3G17010 42 / 0.0005 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 42 / 0.0007 B3 VDD VERDANDI (.1) AT1G25560 42 / 0.0007 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032315 [exp] 541 / 0 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 517 / 7e-180 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10014586 [exp] 254 / 9e-82 AT3G19184 77 / 2e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10021906 [exp] 251 / 8e-81 ND / Lus10019871 [exp] 248 / 9e-77 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 231 / 1e-70 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 215 / 2e-64 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 211 / 9e-63 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10031022 [exp] 197 / 7e-58 AT3G19184 96 / 4e-22 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140700 [exp] 328 / 2e-108 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 294 / 1e-94 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 213 / 2e-63 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 208 / 2e-61 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 206 / 7e-61 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 204 / 1e-59 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 120 / 9e-31 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 111 / 2e-28 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 113 / 3e-28 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 97 / 7e-23 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10024689 pacid=23161521 polypeptide=Lus10024689 locus=Lus10024689.g ID=Lus10024689.BGIv1.0 annot-version=v1.0 ATGCATGTTCAACCAGCTCCCTTTAAGCGATTCAAGTGGTTCAATTTGAAGTATTCTCGTGGATCTCAGAACGTACCACATCAAGTCATTCGTTACTTTT TCGAAGGCTCTCGTGATGAAGATAAGCAATCTACGGTTGAGAAGCTCTTTGGTAATAACTCTCTCGCGAATTCAATTCAACCAGGAGATTCAACTCCTGA CATCATTGGCAAGTTGAACGATGATTTGTCCGCCGATACTGATATGTTGATTTCTCCTTTTTCTCGGAATCAGACGCAGGAAGGAGGCTTTGTTCGGAAC CAGTCTACTATAAGCAAGGCACGAAAGAGGGTGGCCGTAGAGACTGTATATGTTAATGGCTTCGAGGTTGAGAATTCCGTACTGTTGAAAGCACAGGAGA TTAAAGCTAGTCTACCAGAAAACTTGCCTAGCATGATCAAAGTTATGCTACCTTCATATGTTTCTGGTGGATTGCGTCTTGAGAAAGGGTTCGGGACCAA GCATTTGCCTGATAAGGACACAATGATCGACTTGGAAGACGAGGATGGCAATATTTATTACGCAAGGTATCTAGTTCGTAAACAAGGGCTTAGTGGTGGA TGGAAATTGTTCGCCACGGATCACAAGTTAGTAGCAGGAGATGCTCTGGTGTTTCAGTTAGTTGAGCCAACCAAGTTCAAGATCTACATTGTTAGGGGAA GAAGAAGCTCAGAGGAAATAGATGTTGATTCTGGCCTTCTGCAAATGGACAGTCATAAGAAAAAACTGAAATCTGAGAATCTCTCCAAAGGTTACAAACA AAGAATCGTGGGAGCTACTCTGCTGTCTAACAACAACTCCAAACGACATGAGTCTGACGACAGAGTAGAAGGCAATTTCGGATTCAGCATCTCAGATGGC ATACGGATGGCTGAATCTACGACTATCGATTTCAAGCAAGTCAAAAGCTTTGACGACTTTGACATTGTGGTCAACGGCTTAGTGATAAACTGCGAGCTCT CCAGACACCTTCAGCTCAAGTACTATGAACTATGCAACAGCCAGAAGTTGTTTCTCCACCAACACCTTCTCAGCGGCCTCAACTGTAAGCTGATCGTCGG AGTCATTGCGGAGACCATAAACATTGCTGACGAAATCAGAGCTTCGGAATTAACACAGCAGAAGAAGGACGAATTCACGACATGGGAGAAGACTTTGGTA GCGTTTGAGAAGTTGGGAATGAATGTTGAGTTCATACTCGCCAGGTTGAGGCAGCTCATGGGTCTTTGTGATGATGTGAACCGGCGCAAGAGACTGAACA CTGAGAGGATCCGAGTAGAAGAGGAGGTGAAGGTTTTGAAGGCGAAACTTGAGGAATCGGTCGAAAGGATCAAAAGAATAGATGGAGAAATGGAAGTAGA TCATGAGGTGAAGTTCAGAGAATTGGCTAAAGCTCCATGGTCACTGTGA
AA sequence Show only first row Show all	>Lus10024689 pacid=23161521 polypeptide=Lus10024689 locus=Lus10024689.g ID=Lus10024689.BGIv1.0 annot-version=v1.0 MHVQPAPFKRFKWFNLKYSRGSQNVPHQVIRYFFEGSRDEDKQSTVEKLFGNNSLANSIQPGDSTPDIIGKLNDDLSADTDMLISPFSRNQTQEGGFVRN QSTISKARKRVAVETVYVNGFEVENSVLLKAQEIKASLPENLPSMIKVMLPSYVSGGLRLEKGFGTKHLPDKDTMIDLEDEDGNIYYARYLVRKQGLSGG WKLFATDHKLVAGDALVFQLVEPTKFKIYIVRGRRSSEEIDVDSGLLQMDSHKKKLKSENLSKGYKQRIVGATLLSNNNSKRHESDDRVEGNFGFSISDG IRMAESTTIDFKQVKSFDDFDIVVNGLVINCELSRHLQLKYYELCNSQKLFLHQHLLSGLNCKLIVGVIAETINIADEIRASELTQQKKDEFTTWEKTLV AFEKLGMNVEFILARLRQLMGLCDDVNRRKRLNTERIRVEEEVKVLKAKLEESVERIKRIDGEMEVDHEVKFRELAKAPWSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10024689 [exp]	0	1
					Lus10042808 [exp]	1.4	0.8454
AT1G71430			unknown protein		Lus10007091 [exp]	4.5	0.8148
AT2G04480			unknown protein		Lus10001750 [exp]	5.0	0.8006
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10027634 [exp]	6.0	0.8023
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10001205 [exp]	6.9	0.7818
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10029715 [exp]	15.0	0.7656
AT4G04980			unknown protein		Lus10036173 [exp]	15.3	0.7604
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	15.6	0.8041
AT5G21060			Glyceraldehyde-3-phosphate deh...		Lus10034077 [exp]	17.7	0.7478
AT1G12650			unknown protein		Lus10024493 [exp]	22.5	0.7656

Compare expression of checked genes

Lus10024689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.