Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 221 / 1e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 221 / 2e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 218 / 2e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29660 218 / 3e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 211 / 5e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 203 / 2e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 200 / 1e-60 SGNH hydrolase-type esterase superfamily protein (.1) AT1G71691 200 / 4e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT4G30140 198 / 6e-60 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 193 / 6e-58 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032316 [exp] 596 / 0 AT1G29660 277 / 7e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 239 / 2e-75 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 239 / 2e-75 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 237 / 1e-74 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 234 / 2e-73 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011999 [exp] 228 / 4e-71 AT5G45670 328 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002774 [exp] 226 / 2e-70 AT5G45670 328 / 1e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012002 [exp] 214 / 6e-66 AT5G45670 295 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 215 / 9e-66 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076400 [exp] 257 / 3e-82 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 239 / 1e-75 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008300 [exp] 235 / 7e-74 AT1G29670 318 / 6e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 228 / 5e-71 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008904 [exp] 204 / 3e-63 AT4G18970 246 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G008100 [exp] 206 / 5e-63 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G008100 [exp] 206 / 7e-63 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 204 / 4e-62 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 203 / 1e-61 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 203 / 1e-61 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10024690 pacid=23161509 polypeptide=Lus10024690 locus=Lus10024690.g ID=Lus10024690.BGIv1.0 annot-version=v1.0 ATGGCTTCACGGTGGTCCTCCGCCGTCTGGACAGCTGCCGCCGTGTTATCCTTCGTCGTCGCCGTCGGGGCCAAACCCTTTCCTTGCTATTTCATATTCG GCGACTCTTTAGCCGATAATGGGAACAACAACATGCTCAACACCGATGCTAGAGTCAATTACCAGCCATACGGGGTCGATTTTTCCGCCGGTCCAACCGG ACGGTTCACCAATGGCCGAACCATTGTCGACTTCTTTGCCGAGTACTTGGGCTTCAGCCAATACATCCCACCATATGCAACCGCCGTAAGCGAGAACATT GTGACGCCACCGGATTTTCTGTCCGGTGTGAACTACGCTTCCGGCGTCGCCGGCATCCTCGAAGAAACCGGCCAAGCAATGGGGGATCGGATACCGCTGG GAAAGCAATTAGAGAACCACGAAATCACCATGCGTCGGATCTTGGAGCGTATGAGAGACGTGGTAGGCACCTCGAACCACCTGAGGCAGTGCTTGTACAC TTTAGGGTTCGGCAGTAATGACTTCATCAACAATTACTTCCGTCCTAATTATCCCTCCGGCAAACTTTATACCGTCGATCAATTTTCCCAAATTTTGGTT CAACGCTACGTATTGGGACTTCTGGTACGTACACCTATCCAAAAACCTATCACATTTTATTTATGGATGTACATATCCAGGATCGAAACATGTAAAAAGC CGGATTTAAATCGAAATATGTGTATCGAAAATTATACGGATACGGAGCGAGGAAAATCGCGGTGTTTCCGGTGGGTCAAATCGGATGCACCCCATCCGCG ATCCAGACGTACGGAACGCCGTAGTGACGATACAACCGGTTCCGCCACCGGCTGTGCCGAGAAGTTAAACGACGCCGCCAACATCTTCAACGGCCGTCTG AAGTCCGCAATCGATAAGCTGAATCTGATTCTATTCGGTGCCCAGTTGATCTACATCGGGCCCGGATCCGACGCCCTCTTGACCACCCGCCTTAACCGTT CCAGCAGCAATTCTTATTTAGGGAATGTGGATTCGCCGTGCTGCGTGGTGGAGCCGATGAGCGGGCAGTGCGTCCCGAACGAAGCACCGTGTCCCGACAG AACGGAGTATGTTTTCTATGATTGGTTCCATCCCACCGATGCTTTCAATTCGTATACCGCCAAGACTGCGTTCGAGTCGTTGCGACCACTCTTCGGTGCT TCTGCTTCGTATGCCGCCGCCGGAGATGCAGCCGCCGACATGTAG
AA sequence Show only first row Show all	>Lus10024690 pacid=23161509 polypeptide=Lus10024690 locus=Lus10024690.g ID=Lus10024690.BGIv1.0 annot-version=v1.0 MASRWSSAVWTAAAVLSFVVAVGAKPFPCYFIFGDSLADNGNNNMLNTDARVNYQPYGVDFSAGPTGRFTNGRTIVDFFAEYLGFSQYIPPYATAVSENI VTPPDFLSGVNYASGVAGILEETGQAMGDRIPLGKQLENHEITMRRILERMRDVVGTSNHLRQCLYTLGFGSNDFINNYFRPNYPSGKLYTVDQFSQILV QRYVLGLLVRTPIQKPITFYLWMYISRIETCKKPDLNRNMCIENYTDTERGKSRCFRWVKSDAPHPRSRRTERRSDDTTGSATGCAEKLNDAANIFNGRL KSAIDKLNLILFGAQLIYIGPGSDALLTTRLNRSSSNSYLGNVDSPCCVVEPMSGQCVPNEAPCPDRTEYVFYDWFHPTDAFNSYTAKTAFESLRPLFGA SASYAAAGDAAADM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10024690 [exp]	0	1
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030007 [exp]	5.8	0.8351
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030008 [exp]	15.7	0.7921
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	16.2	0.8163
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10003190 [exp]	19.4	0.7838
AT3G11640			unknown protein		Lus10016964 [exp]	25.1	0.7817
AT4G13600			Carbohydrate-binding X8 domain...		Lus10032601 [exp]	27.2	0.7787
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10020764 [exp]	27.2	0.7676
AT3G01360			Family of unknown function (DU...		Lus10013105 [exp]	31.2	0.6954
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10016031 [exp]	31.2	0.7697
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10039641 [exp]	33.3	0.7742

Compare expression of checked genes

Lus10024690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.