Plant FIBer expression Database

Lus10024691 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032314
[exp]
54 / 9e-09 ND /
Lus10024688
[exp]
50 / 2e-07 ND /
Lus10028610
[exp]
48 / 4e-07 ND /
Lus10028722
[exp]
48 / 1e-06 AT2G42730 76 / 1e-14 F-box family protein (.1.2)
Lus10018912
[exp]
46 / 7e-06 ND /
Lus10021237
[exp]
45 / 2e-05 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G092600
[exp]
45 / 9e-06 ND /
PFAM info
Representative CDS sequence
>Lus10024691 pacid=23161657 polypeptide=Lus10024691 locus=Lus10024691.g ID=Lus10024691.BGIv1.0 annot-version=v1.0
ATGGAAATAAAGGAGGTGGATCTCCGGATTCATGAATACTCTAATCATAAAGAGGTGGGGAGGCTTGGATTTGTGAGTTCATACGATGTTCTTCGAAATC
AGAACATGGTTGTGCAGCTGGAGACCCTCTCTTTCGAGGCGGACTTTGTGAACCTGTGGCATTTTTATTCAATCAATGAGTTTCCATTCCTCAAACAGCT
GACTGTGTACGTCGAATGTCGTGAGGGTTTAGCTGATGAATACTATAGACTGGTTCCTCTCATAAATGCTTGTCCATTGTTACATCGGTTGTCATTGAAG
GCGACCGGTCATGCCCCTTCGGACGTATTAGAAGAGAGGTTTATGGTGTCAGATGGTGGTCAACTGAGAGCCAGTATTACAGTGTTGGAGATGACTGGAT
TTGGCATGTGGTCCTCAAATCATTTTCTGGCTTATGCGCGTCGTAACTTCGTCATGCTTGAGAAGTTGGTAATCGATAACAGCAAATCGGATTATTACCT
CGCGCAATTGCCGAGTTCACTTCAAACTGGAAAGTTCAGTTCCCCTCTACTGTTGAAATCGTGGTGCTCTGAGGAATGA
AA sequence
>Lus10024691 pacid=23161657 polypeptide=Lus10024691 locus=Lus10024691.g ID=Lus10024691.BGIv1.0 annot-version=v1.0
MEIKEVDLRIHEYSNHKEVGRLGFVSSYDVLRNQNMVVQLETLSFEADFVNLWHFYSINEFPFLKQLTVYVECREGLADEYYRLVPLINACPLLHRLSLK
ATGHAPSDVLEERFMVSDGGQLRASITVLEMTGFGMWSSNHFLAYARRNFVMLEKLVIDNSKSDYYLAQLPSSLQTGKFSSPLLLKSWCSEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10024691
[exp]
0 1
AT1G75820 ATCLV1, FLO5, F... FLOWER DEVELOPMENT 5, FASCIATA... Lus10013562
[exp]
1.0 0.8902
AT1G78980 SRF5 STRUBBELIG-receptor family 5 (... Lus10033333
[exp]
2.0 0.8347
AT4G10950 SGNH hydrolase-type esterase s... Lus10008403
[exp]
4.0 0.7734
AT3G54510 Early-responsive to dehydratio... Lus10043455
[exp]
6.5 0.8026
AT2G28550 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAG... Lus10015055
[exp]
6.5 0.8274
AT4G01580 B3 AP2/B3-like transcriptional fa... Lus10003313
[exp]
7.7 0.7705
AT4G38380 MATE efflux family protein (.1... Lus10014441
[exp]
10.1 0.7563
AT1G01950 AtKINUb, ARK2 Arabidopsis thaliana KINESIN U... Lus10037965
[exp]
11.2 0.7560
AT2G33490 hydroxyproline-rich glycoprote... Lus10002580
[exp]
13.7 0.6617
AT4G36920 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APE... Lus10023165
[exp]
13.9 0.8224

Lus10024691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.