Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024695 [exp] 200 / 6e-63 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 166 / 1e-49 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10002239 [exp] 157 / 2e-46 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10014678 [exp] 113 / 9e-32 ND / Lus10034161 [exp] 107 / 1e-27 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10001507 [exp] 89 / 8e-21 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10020748 [exp] 81 / 6e-18 AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1) Lus10022888 [exp] 80 / 1e-17 ND 38 / 0.010 Lus10029357 [exp] 78 / 9e-17 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024694 pacid=23161670 polypeptide=Lus10024694 locus=Lus10024694.g ID=Lus10024694.BGIv1.0 annot-version=v1.0 ATGTTTGATGCCAAATTTCAATCTCTTGGTTTCCGGATGCTGACAAAATTAGAGTTGTTCGAATGCACGTTCGTGTCTGATCACGAAGAGTTTGTCGACA CTTTCTCTGAATTTCCATGCCTGGAGCATTTGGTCCTGGATAGGCTGTCCCCTAAAGGTTTTTTTGATGATGATAAGAGATTCAGGATTTACGGACACAG ATTACTTAGTCTGAGCGTCACGGATACTTATTTCACGGTGCTCGGAATAAATGCACCGAAACTGAAATATTTCTATTTTGAAAATCTTTGGGACCTTGTA GAATTCAAAGAGCTAAACCTTCCCTCCCGCGATCATGCTGTGATTTGGACCTATGATGAGAGCAAGTCTGTTGAGGACGACAGAACTGAGCATGAAATAC TATCTCTTTTGATGTCCTTGTTGCATGGGCTGAGTAATGCGACGACTCTTACGTTGGGTCGCTCCACGATTGAGCTATTGAGTGATATATCCGAGCTTCT AGAAAAACAGCAGTCTCCTTTCACAAGACGAGAGACTTTGAGTTTGGAGGAGCTAGAAGTACATGAGGCACCGGCAGTGATCAACTACTTTGTTAAAGGT GGCTCTTTGGGTACAAAACCAGTTGTCAGTTTGAATGACAGGTAG
AA sequence Show only first row Show all	>Lus10024694 pacid=23161670 polypeptide=Lus10024694 locus=Lus10024694.g ID=Lus10024694.BGIv1.0 annot-version=v1.0 MFDAKFQSLGFRMLTKLELFECTFVSDHEEFVDTFSEFPCLEHLVLDRLSPKGFFDDDKRFRIYGHRLLSLSVTDTYFTVLGINAPKLKYFYFENLWDLV EFKELNLPSRDHAVIWTYDESKSVEDDRTEHEILSLLMSLLHGLSNATTLTLGRSTIELLSDISELLEKQQSPFTRRETLSLEELEVHEAPAVINYFVKG GSLGTKPVVSLNDR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024694 [exp]	0	1
AT2G45990			unknown protein		Lus10036369 [exp]	1.0	0.9091
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10005198 [exp]	7.0	0.8959
AT1G01150			Homeodomain-like protein with ...		Lus10026308 [exp]	7.2	0.8648
AT5G26610			D111/G-patch domain-containing...		Lus10001513 [exp]	7.7	0.8984
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	7.7	0.9085
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004125 [exp]	9.0	0.8996
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10009862 [exp]	10.7	0.8698
AT4G26310			elongation factor P (EF-P) fam...		Lus10007884 [exp]	13.3	0.8922
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10015657 [exp]	15.2	0.8722
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	16.0	0.8723

Compare expression of checked genes

Lus10024694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.