Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03220 81 / 1e-16 Protein with RNI-like/FBD-like domains (.1) AT1G69630 79 / 7e-16 F-box/RNI-like superfamily protein (.1) AT3G18150 73 / 7e-14 RNI-like superfamily protein (.1) AT1G78760 71 / 2e-13 F-box/RNI-like superfamily protein (.1) AT5G38390 71 / 3e-13 F-box/RNI-like superfamily protein (.1) AT3G29830 70 / 5e-13 F-box/RNI-like superfamily protein (.1) AT5G22720 70 / 6e-13 F-box/RNI-like superfamily protein (.1.2) AT1G16930 68 / 2e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G26030 68 / 3e-12 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT5G22730 66 / 1e-11 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024696 [exp] 476 / 1e-168 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10002239 [exp] 375 / 2e-129 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10034161 [exp] 263 / 2e-85 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024694 [exp] 244 / 7e-80 ND / Lus10042477 [exp] 226 / 9e-71 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10026190 [exp] 224 / 3e-70 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10001507 [exp] 223 / 8e-70 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 221 / 1e-68 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10007058 [exp] 205 / 9e-63 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337200 [exp] 131 / 6e-35 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 122 / 9e-32 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.015G002100 [exp] 114 / 1e-28 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 74 / 2e-14 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 67 / 4e-12 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 66 / 8e-12 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.013G151700 [exp] 66 / 9e-12 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 65 / 3e-11 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 59 / 3e-09 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 58 / 4e-09 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10024695 pacid=23161600 polypeptide=Lus10024695 locus=Lus10024695.g ID=Lus10024695.BGIv1.0 annot-version=v1.0 ATGGAGAACAACTGTGACTGCCTGTTACGGAGAACTGACAGGTTAAGCAATCTTCCTGACTCAGTTCTTTATCACATCCTTTCATTTCTAGAAACCAAAG ATGCTATTCAAACCTCTGTATTATCCCGTCGGTGGAGATCTGCATGGAAGCATGTTCCCACTCTCAATATTCGTAGCAAATCCTTCAGAGAGTATGCAAG TTTCAAAATATGCTTAGACAAGATTTTGTCCCTACGCTATCCACTTAGTCTCCGAAAGGTCATATTGTTTGACCGCGGAATTGCTGAGGATCGTGACGGT TGCCTATTCGCAAGGCTCATCAAATATGCCTTCTCCCATGATGCTAAACATTTGTTCATTGACATGACCAATAATGTCTTATGGGAAGACGACACAGAGT ACTATTTCTCTGGATTGTTTGACACTGTCTCCGATTGCAGTCTTGAAACCTTGACATTAGTCACTGTCTTCATCGATTTCGAAATTCAATCTTCTGGTTT CCGGATGCTCACAAAATTAGAGCTGCTCCGATGCATGTTCCTCTCTGATGGTGAAGGTCTTGTGGATCCATTCTCTAAATTTCCATGTCTGGAGCATTTG GTCTTGCTTACTACGTTACCTGAGAACCTTCAAGGTGATGGTAAGAGATTGAGGATTTCCGGACACAGATTACTTAGTCTGAGCATAACGGAAAGTTATT TCAGGAAACTCGAAATACATGCACCGAAACTTGAATATTTCTATTATCAAAGTTTTGAGGAGCATGTGGAATTCAAAGAGCTAAACCTTCCCTCCCTCGA TCATGCTGTGATTTGGATCTACAATGAGTGCTGTTGTGATGGGAACCCTGAGCATGGAATACATTGTTGGATGTCCTTGTTGCATGGGCTGAGTAATGCG AGGACTCTCAAGTTGTGTCACTCTACGATTGAGCTATTGAGTGGTATATCCGAGTTTCTAGAAAAACAGCAGTCTCCTTTCACAAGACTAGAGACTTTGA GTTTGGAGGAGCTAGAAGTACATGAGGCACCCGCAGTGATCGACTACTTTGTTAAAGGTGCTTCTTCAGGTACAAAACCGGTTGTTAAGTTTGAATGA
AA sequence Show only first row Show all	>Lus10024695 pacid=23161600 polypeptide=Lus10024695 locus=Lus10024695.g ID=Lus10024695.BGIv1.0 annot-version=v1.0 MENNCDCLLRRTDRLSNLPDSVLYHILSFLETKDAIQTSVLSRRWRSAWKHVPTLNIRSKSFREYASFKICLDKILSLRYPLSLRKVILFDRGIAEDRDG CLFARLIKYAFSHDAKHLFIDMTNNVLWEDDTEYYFSGLFDTVSDCSLETLTLVTVFIDFEIQSSGFRMLTKLELLRCMFLSDGEGLVDPFSKFPCLEHL VLLTTLPENLQGDGKRLRISGHRLLSLSITESYFRKLEIHAPKLEYFYYQSFEEHVEFKELNLPSLDHAVIWIYNECCCDGNPEHGIHCWMSLLHGLSNA RTLKLCHSTIELLSGISEFLEKQQSPFTRLETLSLEELEVHEAPAVIDYFVKGASSGTKPVVKFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69630			F-box/RNI-like superfamily pro...		Lus10024695 [exp]	0	1
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	1.0	0.8722
AT2G18410			unknown protein		Lus10009164 [exp]	2.0	0.8579
AT5G05800			unknown protein		Lus10007443 [exp]	2.0	0.7965
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Lus10025689 [exp]	10.4	0.7793
AT4G36850			PQ-loop repeat family protein ...		Lus10022491 [exp]	11.5	0.7592
AT1G20770			unknown protein		Lus10030736 [exp]	12.6	0.7806
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	14.7	0.7375
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035128 [exp]	15.5	0.7886
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	16.2	0.8142
AT3G08880			unknown protein		Lus10022668 [exp]	17.3	0.7584

Compare expression of checked genes

Lus10024695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.