Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58860 75 / 1e-14 F-box/RNI-like superfamily protein (.1) AT5G60610 73 / 5e-14 F-box/RNI-like superfamily protein (.1) AT4G14096 72 / 2e-13 F-box/RNI-like superfamily protein (.1) AT5G22720 71 / 4e-13 F-box/RNI-like superfamily protein (.1.2) AT1G16930 70 / 7e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22730 69 / 9e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56820 69 / 1e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G00160 69 / 1e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G52680 69 / 1e-12 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G62440 69 / 1e-12 SAF1 secondary wall thickening-associated F-box 1, F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024695 [exp] 476 / 7e-169 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10002239 [exp] 428 / 5e-150 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10034161 [exp] 256 / 1e-82 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 236 / 2e-74 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10042477 [exp] 233 / 1e-73 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10026190 [exp] 230 / 3e-72 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10001507 [exp] 222 / 5e-69 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024694 [exp] 211 / 5e-67 ND / Lus10007058 [exp] 211 / 1e-64 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 155 / 1e-43 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 138 / 3e-37 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 135 / 3e-36 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 90 / 1e-19 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 88 / 5e-19 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 83 / 3e-17 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 60 / 1e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 57 / 9e-09 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 56 / 2e-08 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.013G151700 [exp] 55 / 4e-08 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10024696 pacid=23161558 polypeptide=Lus10024696 locus=Lus10024696.g ID=Lus10024696.BGIv1.0 annot-version=v1.0 ATGGAGAACGCCTGTGACTGCCTGTTACGAAGAACCGACAGGTTAAGCTATCTCCCTGACTCAGTTCTTTATCACATCCTTTCATTTCTAGAAACCAAAT ATGCTGTTCAAACCTCTGTATTATCCCGTCGCTGGAGATCTGCATGGAAACATGTTCCTACTCTCAATATTCGTAGCAAATCCTTCAGAGAGTATGCAAA TTTCAAAATATGCTTAGACAAGATTTTGTCCCTACGCTATCCCCTTAGTCTCCGACAGATCACCTTGGTTGATGAGGGAAACGCCGAGAACCGTGACAGT AGCTTGTTCGCAAAGGTCATCGAGTATGGCTTCTCCCATGATGCTCAACATTTGTTCATTGACATGAGCAATGATGTCTCGTGGGAAGAAGGCACGGAAT TCTTTTTCTCCGAATTGTTTGACACTGCCTCTGATCGCAGTCTCGAAACCTTGACGTTAGACACTTTTGTCATCGATGTCGAATTTCAACATTCTGGTTT CGGGATGCTGACAACATTAAAGCTGTTTCGGTGCATGTTCCTGTCTGATGACGAAGATCTTGTGGACACATTCTCTAAATTTCCATGTCTTGAGCATTTG GACTTGTATATGCCGTCCCCTGAGGACGATGTTGATGATAAGATATTCAGGATTTCCGGACTGAAGTTACTTAGTCTGAGCATCGACGATACTTATCTCA CGAAACTCGAAATAGATGCACCAAAGCTCAAATATTTCTATTTCCAAAAGTTCTGGGATTTTGTGGAATTCAAAGAGCTAAACCTTCCTTCCCTGGATTA TGCTGAGATTTGGGTCGAAAATGGGGACTGTACTGGTGAGGAGTATACTAACTATGCCAAACATGGTTTGATGTCCCTGTTTCACGGCCTACGGAATGCA ACGACTCTTAAATTGGGTTGCTTAACTCTGGAGGTATTGCGTTCTATTCCCGAGTTTCTAGAACAACAACAGTCTCCGTTTACGAGACTAGAGACGTTGA TGTTGGGGACTGTTGATGTACCAGACACAGTGATTGACTACTTCGTTAAAGGTTGTCCTTCTGGTGCGAAACCTGCAGTTAAGTTTGAGAAACCGGTAGT TACTCGTTCGCCGCAAGTAGTTGTTTCAGAAGAACATTCTGTGTGA
AA sequence Show only first row Show all	>Lus10024696 pacid=23161558 polypeptide=Lus10024696 locus=Lus10024696.g ID=Lus10024696.BGIv1.0 annot-version=v1.0 MENACDCLLRRTDRLSYLPDSVLYHILSFLETKYAVQTSVLSRRWRSAWKHVPTLNIRSKSFREYANFKICLDKILSLRYPLSLRQITLVDEGNAENRDS SLFAKVIEYGFSHDAQHLFIDMSNDVSWEEGTEFFFSELFDTASDRSLETLTLDTFVIDVEFQHSGFGMLTTLKLFRCMFLSDDEDLVDTFSKFPCLEHL DLYMPSPEDDVDDKIFRISGLKLLSLSIDDTYLTKLEIDAPKLKYFYFQKFWDFVEFKELNLPSLDYAEIWVENGDCTGEEYTNYAKHGLMSLFHGLRNA TTLKLGCLTLEVLRSIPEFLEQQQSPFTRLETLMLGTVDVPDTVIDYFVKGCPSGAKPAVKFEKPVVTRSPQVVVSEEHSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22720			F-box/RNI-like superfamily pro...		Lus10024696 [exp]	0	1
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10014029 [exp]	2.2	0.8747
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	6.5	0.8704
AT3G16640		TCTP	translationally controlled tum...		Lus10002877 [exp]	9.8	0.8570
AT5G05360			unknown protein		Lus10012213 [exp]	10.6	0.8531
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10005077 [exp]	18.5	0.8311
AT1G67620			Lojap-related protein (.1)		Lus10036979 [exp]	20.8	0.8044
AT3G25120			Mitochondrial import inner mem...		Lus10008094 [exp]	22.4	0.8356
AT2G16860			GCIP-interacting family protei...		Lus10039220 [exp]	22.6	0.8521
AT4G04614			unknown protein		Lus10014685 [exp]	30.3	0.7823
AT1G08845			Ribosomal L18p/L5e family prot...		Lus10001727 [exp]	32.3	0.8114

Compare expression of checked genes

Lus10024696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.