Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28410 40 / 0.0002 F-box/RNI-like superfamily protein (.1) AT5G02700 40 / 0.0003 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024701 [exp] 74 / 1e-17 AT1G78760 70 / 4e-15 F-box/RNI-like superfamily protein (.1) Lus10031499 [exp] 59 / 7e-12 AT1G69630 56 / 7e-10 F-box/RNI-like superfamily protein (.1) Lus10023425 [exp] 57 / 5e-10 AT5G56440 61 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 55 / 2e-09 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10034161 [exp] 55 / 2e-09 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029587 [exp] 52 / 2e-08 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10042331 [exp] 51 / 2e-08 AT3G18150 67 / 7e-13 RNI-like superfamily protein (.1) Lus10006318 [exp] 51 / 4e-08 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10004655 [exp] 51 / 7e-08 AT2G26030 63 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337200 [exp] 48 / 4e-07 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 43 / 2e-05 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104100 [exp] 42 / 5e-05 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 41 / 0.0001 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.001G395000 [exp] 40 / 0.0003 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024697 pacid=23161653 polypeptide=Lus10024697 locus=Lus10024697.g ID=Lus10024697.BGIv1.0 annot-version=v1.0 ATGAAAAACCCAATCGGAGCTTTTTGTCCCGCTGAAGTTCCCCGCGTGAAACCAGAAACCCTAAATCGACGATGTGAAGCTTTCATCCAGAGTATCTATC TGGTTTTTCAATCGGCCTCAGCTGCTGCCACTGCAGTTTCAGCGACTGTTATCTTTTACTCGAAGGTCAGTTGTTCATCGGAAGATCTCCGTTCTTCGCA GTGTTCTGGATTCACGGAACTCTGTAGTAATCTGAAATTGATTGCATCTCTTAGCAGACAAGCTATGAACAACGACTACTGTGTCTGTCAGTGGGGGCAA GCTGCTAAAAGGGCCCTCGGAGAAGAAGACGACGTCATTGCTGCTGTTGATAGGTTAAGTTATCTCCCGAACTCCATACTTCACCACATCCTTCCATTTC TCGATACCAAATGTGTTATTCAAACCTCTGTCTTGTCATGA
AA sequence Show only first row Show all	>Lus10024697 pacid=23161653 polypeptide=Lus10024697 locus=Lus10024697.g ID=Lus10024697.BGIv1.0 annot-version=v1.0 MKNPIGAFCPAEVPRVKPETLNRRCEAFIQSIYLVFQSASAAATAVSATVIFYSKVSCSSEDLRSSQCSGFTELCSNLKLIASLSRQAMNNDYCVCQWGQ AAKRALGEEDDVIAAVDRLSYLPNSILHHILPFLDTKCVIQTSVLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024697 [exp]	0	1
AT1G50910			unknown protein		Lus10043058 [exp]	2.6	0.8484
AT3G48425			DNAse I-like superfamily prote...		Lus10019483 [exp]	3.2	0.8276
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	4.2	0.8318
AT4G16580			Protein phosphatase 2C family ...		Lus10016309 [exp]	5.8	0.8370
AT1G69630			F-box/RNI-like superfamily pro...		Lus10002239 [exp]	7.9	0.8168
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10020123 [exp]	8.7	0.8048
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	11.0	0.8278
AT5G10320			unknown protein		Lus10000634 [exp]	13.0	0.8079
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10036365 [exp]	13.0	0.8111
AT1G60560			SWIM zinc finger family protei...		Lus10025765 [exp]	13.3	0.7994

Compare expression of checked genes

Lus10024697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.