Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32750 369 / 2e-129 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022138 [exp] 494 / 3e-176 AT4G32750 409 / 8e-143 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038600 [exp] 393 / 8e-139 AT4G32750 360 / 8e-126 unknown protein Potri.006G241200 [exp] 382 / 2e-134 AT4G32750 362 / 1e-126 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024698 pacid=23161513 polypeptide=Lus10024698 locus=Lus10024698.g ID=Lus10024698.BGIv1.0 annot-version=v1.0 ATGGCAATCATCAGTGACGCGCTGCGGCAAGCGTTCATGCCGAAACAAGAGTACGAGAGCTTGTGCGAGGAAGAGAAGGCATGGTCGAAGCTACAGAAAC CTCTCTTCGCTTCTGCGGTGGCGTTCGTCTGCCTTGCTATCCTTGTCTGCACGGTAGTTAGTTTGAGGATTGTGTTCCCTGCCAATGGAGTGAGGCGGCC GTTTTGTTCTGACCGGCGGCTGCAACCTCTGTCCATAAACGTCAAGGGAGGAGGTAACTCGGATCTGTTTCCCGGTGCATTTTATCTGACGGATCAGGAG ATTGCTGACTATTACTGGATGGTGCTCTTTATCCCGTCGGGCGTTCTTTTTTGCGCTTCATTTCCTTATCTGGCATCTGGGATTACTGTTGCTTATTCTG CTCCAACTAGGCATAGTTGCTTAAAGGTGGTTGAAAATAATTACTGTGCTTCCAGAAGAGGTGGTGTACGCTGCCTGTCAATCCTAAATGTTGTATTTGG CGTCATATTTGGTCTCCTTGCTGTATTCCTTGGTTCAAGCCTCTTGACATTAGGGAGTAGTTGCTCTGTGCCCTTGTTCTGGTGCTATGAGATTGCTACA TGGGGACTGGTGATTCTATATGGGGGAACTGCATTCTTCCTAAGAAGAAAAGCAGCTATAATCCTTGACGGAGGAGATCATGGTAGCAGGAACCTTGGAC TGGAAATGCTGGAAGCAAACACATTGGTTGTCACACCAGAGGTGGAAAGGCGAGTTAATGAAGGTTTTAAAACTTGGGCAGGATCGTCTGTCCTATCTTC TTCTGATGAAGAAGATGAACCAGACAATTTCGTTGAAGCACCTGAGCCAACAAATGCATCTTTGGGAGTGTAG
AA sequence Show only first row Show all	>Lus10024698 pacid=23161513 polypeptide=Lus10024698 locus=Lus10024698.g ID=Lus10024698.BGIv1.0 annot-version=v1.0 MAIISDALRQAFMPKQEYESLCEEEKAWSKLQKPLFASAVAFVCLAILVCTVVSLRIVFPANGVRRPFCSDRRLQPLSINVKGGGNSDLFPGAFYLTDQE IADYYWMVLFIPSGVLFCASFPYLASGITVAYSAPTRHSCLKVVENNYCASRRGGVRCLSILNVVFGVIFGLLAVFLGSSLLTLGSSCSVPLFWCYEIAT WGLVILYGGTAFFLRRKAAIILDGGDHGSRNLGLEMLEANTLVVTPEVERRVNEGFKTWAGSSVLSSSDEEDEPDNFVEAPEPTNASLGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32750			unknown protein		Lus10024698 [exp]	0	1
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10028841 [exp]	4.4	0.8344
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10013540 [exp]	6.9	0.8254
AT5G64270			splicing factor, putative (.1)		Lus10034803 [exp]	24.1	0.8311
AT4G38440		IYO	MINIYO, unknown protein		Lus10025099 [exp]	28.4	0.8092
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10017684 [exp]	33.3	0.8211
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	37.4	0.8192
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	51.9	0.8068
AT2G47300			ribonuclease Ps (.2.3)		Lus10001156 [exp]	72.6	0.7720
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10028066 [exp]	82.5	0.7830
AT3G07565			Protein of unknown function (D...		Lus10027044 [exp]	87.0	0.7209

Compare expression of checked genes

Lus10024698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.