Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34360 113 / 3e-27 translation initiation factor 3 (IF-3) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032318 [exp] 537 / 0 AT1G34360 142 / 4e-37 translation initiation factor 3 (IF-3) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G137000 [exp] 148 / 1e-39 AT1G34360 182 / 8e-51 translation initiation factor 3 (IF-3) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05198 [flax] [poplar] IF3_N Translation initiation factor IF-3, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024699 pacid=23161628 polypeptide=Lus10024699 locus=Lus10024699.g ID=Lus10024699.BGIv1.0 annot-version=v1.0 ATGGCTTACTGGAGCAGACTCGCTCAATCTCAGCTGACCCATCAATGGCGGAGACGTTGTTTCCATACTTCTTCTTATGCTTCCTCCATTATTTACCCTG CTAACAACTCCTCCAGTGCGTTCGCTTTGGGAGACCGTTTGTCAGGAACTACAGTAAAAGCCGACGAATTTTCCTACAATGCTAGATTCTTCTTCACTCG TAGCTATTCCCAGGGTTGGGCAAGAAAGGAAGAGGACAATAGTGATGAGCCACGTCTTAATAGGAAGATCACGGGTCAGATTGTTAGGCTCGTCATTGAC TCAGAACACAAAATTGTTTCACTGAGGGAAGCTCTAGAACAAGCCAAGAGAATGAATCTTGATTTGGTTGAGTCGGATGTCATGTTGAGGAAAGGACCTC CCAAAGAAATTCGAATTACTAAGAAAATTGAACTGAAAGATATGAAAATGAAAGCAGATTCTGTGAAAAGATTGATGGAGCGTGGTTACCGAGTGAAGCT TGAAGACGTAGCTATTGTGGAAAGTGGACCATTGTTGGAGAGGAAACTAGCATATGCTATAGTTAGACATGTCAAATTTGGCCCATCCAAGAAAGGTACG AAAAAGGTAAAGGATGCCACCAATGTACGGCCGACTGGAAACTCTGGGGTGTCCGGAGAAGGTGCAGCTGAAACCGACACTGAAGCTGAAGATGGATTCA TTTCTGATGAGGATGACGGTCTCGATGAAATCGCTGTTCATCCAGCTGCCCCAGCAGGAGGCAGAGCTCCCTACTGCTCGGCCCCGAATTCTCCCAATTA CTCTGAGCCCAACAGACAAAGGCATGGCTCTGAAGCAACGGTTAGGATTCCACCCTCTATGCCGGAGCCTCCTCAACCTTCAGAAAATAGGTACAAAAAG CCTGGACCAGCGAACAACAACCATTTCAGACCTCCATTCACAGATAACAGGAGACCTCCTCAAGAAGGAGGTTCATTCAGGCCTCAACGCCAGTTCCCAA GTGACCGGAATCAGCAACAACCCTCTGACTTGAACATTCCTCCAGGAGTTAGGAGGCCAGACCCTTCTGGTCCAGGTACAAAAGTGCCTGGCTTTGGTAT ATTTAGCTCTCCAAAGCCAGGTGGACCATCAGAAGATAACACCAAGAGTAGTAACAATGTAGGGAATCGCTATGGCGGTGCCCGTAGATTTTAG
AA sequence Show only first row Show all	>Lus10024699 pacid=23161628 polypeptide=Lus10024699 locus=Lus10024699.g ID=Lus10024699.BGIv1.0 annot-version=v1.0 MAYWSRLAQSQLTHQWRRRCFHTSSYASSIIYPANNSSSAFALGDRLSGTTVKADEFSYNARFFFTRSYSQGWARKEEDNSDEPRLNRKITGQIVRLVID SEHKIVSLREALEQAKRMNLDLVESDVMLRKGPPKEIRITKKIELKDMKMKADSVKRLMERGYRVKLEDVAIVESGPLLERKLAYAIVRHVKFGPSKKGT KKVKDATNVRPTGNSGVSGEGAAETDTEAEDGFISDEDDGLDEIAVHPAAPAGGRAPYCSAPNSPNYSEPNRQRHGSEATVRIPPSMPEPPQPSENRYKK PGPANNNHFRPPFTDNRRPPQEGGSFRPQRQFPSDRNQQQPSDLNIPPGVRRPDPSGPGTKVPGFGIFSSPKPGGPSEDNTKSSNNVGNRYGGARRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34360			translation initiation factor ...		Lus10024699 [exp]	0	1
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	7.0	0.8787
AT1G26370		RID1	RNA helicase family protein (....		Lus10036917 [exp]	7.1	0.8558
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10043223 [exp]	11.0	0.7923
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10013758 [exp]	13.0	0.8591
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	14.7	0.8338
AT1G77270			unknown protein		Lus10042760 [exp]	15.9	0.8049
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	17.3	0.8553
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	17.8	0.8561
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	19.4	0.8572
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	22.0	0.8481

Compare expression of checked genes

Lus10024699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.