Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55205 56 / 7e-11 unknown protein AT3G13674 53 / 7e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032319 [exp] 148 / 5e-46 AT1G55205 75 / 5e-18 unknown protein Lus10023655 [exp] 114 / 1e-33 AT1G55205 83 / 3e-22 unknown protein Lus10029157 [exp] 39 / 0.0003 AT1G70350 59 / 2e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G082800 [exp] 72 / 6e-17 AT3G13674 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024700 pacid=23161651 polypeptide=Lus10024700 locus=Lus10024700.g ID=Lus10024700.BGIv1.0 annot-version=v1.0 ATGGCATCCACGAAAGTTATCTCTCGGTTATCGTCTCGATTACATCCCATCGCTTTCAAACTCAACAAAGGGTCACTCGCTCCACAGTTCCCCTCGTTAA ACTCTTGCCTTCCGCCGTCTCGAGTCAATGCCTCTGCTGCAAACCTCTCTCGCCTGTCCAGATTACCGGTGGAATTGAGCTGCGTGGTATCGATGTTGCC GCTGCATAGTGCGATTGCTTCAGCAAGGTTAATATCCAGCTTGTCCGTTGACTCGCAGACTTGGACTTTAGTCCCTCAAGGTAGGTTTCTACTTTCAAAT AACTTTATTGTTAATGAGCTTCATTTGCTTCATTCTGAATGCAATAGTCGACGTTTAGAAGCTAGTTGCCAAGTAGAATCGTGGTACTTGAGGTATGCTC ACCACTTGTTTGATGTATTTACTCGGCATAAAGAGAGCCCCTTTCTGTAG
AA sequence Show only first row Show all	>Lus10024700 pacid=23161651 polypeptide=Lus10024700 locus=Lus10024700.g ID=Lus10024700.BGIv1.0 annot-version=v1.0 MASTKVISRLSSRLHPIAFKLNKGSLAPQFPSLNSCLPPSRVNASAANLSRLSRLPVELSCVVSMLPLHSAIASARLISSLSVDSQTWTLVPQGRFLLSN NFIVNELHLLHSECNSRRLEASCQVESWYLRYAHHLFDVFTRHKESPFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55205			unknown protein		Lus10024700 [exp]	0	1
AT1G55205			unknown protein		Lus10032319 [exp]	2.4	0.8556
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	4.6	0.8580
AT4G18100			Ribosomal protein L32e (.1)		Lus10031699 [exp]	5.5	0.8445
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	6.3	0.8559
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10037326 [exp]	8.1	0.8415
AT1G18850			unknown protein		Lus10023616 [exp]	9.4	0.7898
AT1G15420			unknown protein		Lus10007894 [exp]	9.8	0.8500
AT2G03870		EMB2816	EMBRYO DEFECTIVE 2816, Small n...		Lus10035639 [exp]	9.9	0.8036
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10032198 [exp]	13.5	0.8039
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	15.0	0.8374

Compare expression of checked genes

Lus10024700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.