Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02920 44 / 6e-05 F-box/RNI-like superfamily protein (.1) AT5G02910 44 / 0.0001 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032255 [exp] 236 / 2e-75 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10020292 [exp] 204 / 5e-63 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10006513 [exp] 188 / 6e-57 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10027244 [exp] 183 / 1e-54 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 182 / 8e-53 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10027258 [exp] 167 / 8e-50 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10038468 [exp] 154 / 6e-45 ND / Lus10038470 [exp] 154 / 6e-45 ND / Lus10035564 [exp] 155 / 9e-45 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 94 / 2e-21 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 68 / 1e-12 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 68 / 1e-12 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 48 / 6e-06 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 47 / 9e-06 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 46 / 2e-05 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10024702 pacid=23161619 polypeptide=Lus10024702 locus=Lus10024702.g ID=Lus10024702.BGIv1.0 annot-version=v1.0 ATGATTAGAAAGAGGAGGAGGCGGGGAGATGGGGAAGAATTTGACGGACTGAGCGATCTTCCTGACGAAATTTTGCATCAAATCCTCTCGTTCCTCGACA CTAGATCATCCGTTCGGAGCAGTGCTTTGTCAAGAAGGTGGAGATGTGTATGGAAACACGTTCCGGTTCTGACTTTCTGCATACGGTCGGTAAGGTCTGA GCTGGATTTCGGGCAACATGTGGACCAAGTTCTATCCCTACGTTCAGTGTGTCATCTCCTCAAGGTTACAACAGAGTTCCCGATTCGAAACAGGACAGAT CTGTTCGATAGGGTCATGAGATATGCTGCCTGCCATCATATTCAACAGCTATCCATAAGCTGTTACTGGATGATGCTTTCAGACAACAATGCGATTGGAT CGGTATGCTCCTGTTATCAATCTTTGAAAGTGTTGGAGCTACAACGAGCTCGTATGGACGAGAAAGCTATCGGATTGTGGTCTCGTTTGCAGCTGCTCGA AACCCTTGCCCTGCATTACTGCATCTTTGAAGGGTTTGGCAGGGAAGGTGTGCCACCTGATGCTTTTGCTCGTTTCCCCAAGTTGCATTCCCTAAAGCTC ATCGCTTGCTCTTCAAGGAACTATTGTTTATCCAGTTCACTGAAAGTGTTCGGACCCCAACTGCTTGACTTGGAGATAAGTTGTGTAGCATTCGCAAGTA TCGAAATCCTCACCCCTAAACTTCAGTTTTTCTGTTTCAAAGATGATTCTTCTCATCGTATGCTACCAGAAGTTTCCATGCTACACGTTCCTTCCCTCAA TCGTGCAAGCATCGACTTGTCGGGCAACAGGCATTTTCTTGTCGGTCCCAAGAAGCTACTGCTGGTCAAGCGGTGTGTAACCTTGTTCAATGTTCTGTGT AATGTACAGTCTCTTGATTTGGTGCTTGAAACCTTTGAGGTATGCTTGCCTGGTTAG
AA sequence Show only first row Show all	>Lus10024702 pacid=23161619 polypeptide=Lus10024702 locus=Lus10024702.g ID=Lus10024702.BGIv1.0 annot-version=v1.0 MIRKRRRRGDGEEFDGLSDLPDEILHQILSFLDTRSSVRSSALSRRWRCVWKHVPVLTFCIRSVRSELDFGQHVDQVLSLRSVCHLLKVTTEFPIRNRTD LFDRVMRYAACHHIQQLSISCYWMMLSDNNAIGSVCSCYQSLKVLELQRARMDEKAIGLWSRLQLLETLALHYCIFEGFGREGVPPDAFARFPKLHSLKL IACSSRNYCLSSSLKVFGPQLLDLEISCVAFASIEILTPKLQFFCFKDDSSHRMLPEVSMLHVPSLNRASIDLSGNRHFLVGPKKLLLVKRCVTLFNVLC NVQSLDLVLETFEVCLPG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02930			F-box/RNI-like superfamily pro...		Lus10024702 [exp]	0	1
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	2.0	0.8921
AT1G11340			S-locus lectin protein kinase ...		Lus10015424 [exp]	2.0	0.8777
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	10.4	0.8405
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007673 [exp]	10.7	0.8241
AT3G02065			P-loop containing nucleoside t...		Lus10020088 [exp]	11.2	0.8277
AT5G45190			Cyclin family protein (.1.2)		Lus10041213 [exp]	11.9	0.8416
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10026886 [exp]	13.0	0.7797
AT5G36930			Disease resistance protein (TI...		Lus10012311 [exp]	14.1	0.7943
AT5G66900			Disease resistance protein (CC...		Lus10033299 [exp]	16.4	0.8108
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Lus10019368 [exp]	17.1	0.7708

Compare expression of checked genes

Lus10024702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.