Plant FIBer expression Database

Lus10024703 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16916 65 / 4e-15 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032325
[exp]
119 / 2e-36 AT1G16916 65 / 4e-16 unknown protein
Lus10040125
[exp]
58 / 6e-11 AT3G02840 164 / 1e-48 ARM repeat superfamily protein (.1)
Lus10001079
[exp]
56 / 4e-10 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G109100
[exp]
61 / 2e-13 AT1G16916 78 / 4e-21 unknown protein
Potri.012G042600
[exp]
41 / 6e-05 AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1)
Potri.015G031000
[exp]
41 / 7e-05 AT5G37490 323 / 9e-107 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10024703 pacid=23161517 polypeptide=Lus10024703 locus=Lus10024703.g ID=Lus10024703.BGIv1.0 annot-version=v1.0
ATGGGAGCAGTCGATCTACTCCTGGAGTGTACAATCGATTTCTTCTCGTCGTCGAAGAGTGTTGAGAGTTCTGGACAAGCTATGCGACTCCGCCGAGGCA
GAGCCGGCGCGTCGCGTAACGCAATAATGATGCCGCTGCTGGTGAAGAAGATACTGAGGATATCGTCGGCGGCGATCTGTGTTGAGTTCAGCGATTCAGC
GTTTATGGAAGAGGTAGCAGGCCCCCCTGGGCCGAAGATCGTTCGTGTTCTGTATTTCGCCGGCGCCGGAGTACTCTTGACTTTCGCCATCAACAAGTGG
AAAGAGATCGAGAGGAACTCGATCAAGAAGCAACATGGAGTTCACGATTCCGCCAAAGTGGTGCCCAAACCGGCGAATTGA
AA sequence
>Lus10024703 pacid=23161517 polypeptide=Lus10024703 locus=Lus10024703.g ID=Lus10024703.BGIv1.0 annot-version=v1.0
MGAVDLLLECTIDFFSSSKSVESSGQAMRLRRGRAGASRNAIMMPLLVKKILRISSAAICVEFSDSAFMEEVAGPPGPKIVRVLYFAGAGVLLTFAINKW
KEIERNSIKKQHGVHDSAKVVPKPAN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G16916 unknown protein Lus10024703
[exp]
0 1
AT5G20570 HRT1, ROC1, RBX... REGULATOR OF CULLINS-1, RING-b... Lus10008115
[exp]
7.6 0.6907
AT2G35605 SWIB/MDM2 domain superfamily p... Lus10034774
[exp]
8.0 0.6755
AT2G31490 unknown protein Lus10027603
[exp]
29.7 0.6617
Lus10039242
[exp]
30.0 0.6305
AT3G14130 Aldolase-type TIM barrel famil... Lus10013171
[exp]
58.7 0.5717
AT2G16710 Iron-sulphur cluster biosynthe... Lus10021368
[exp]
100.8 0.5981
AT3G14130 Aldolase-type TIM barrel famil... Lus10008133
[exp]
122.1 0.5751
AT3G03100 NADH:ubiquinone oxidoreductase... Lus10007886
[exp]
127.5 0.5796
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Lus10032612
[exp]
153.6 0.5215
AT5G18800 Cox19-like CHCH family protein... Lus10012784
[exp]
155.6 0.5711

Lus10024703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.