Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09620 1668 / 0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT5G16715 57 / 1e-07 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT4G04350 50 / 1e-05 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) AT1G14610 45 / 0.0005 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) AT2G31170 44 / 0.0008 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032320 [exp] 1094 / 0 AT1G09620 882 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10032321 [exp] 893 / 0 AT1G09620 648 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10025653 [exp] 669 / 0 AT1G09620 566 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10015552 [exp] 50 / 1e-05 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10028505 [exp] 48 / 6e-05 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G226700 [exp] 1789 / 0 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.003G003900 [exp] 1785 / 0 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.017G124500 [exp] 54 / 8e-07 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.011G009600 [exp] 50 / 8e-06 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00133 [flax] [poplar] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [flax] [poplar] DALR PF08264 [flax] [poplar] Anticodon_1 Anticodon-binding domain of tRNA ligase
Representative CDS sequence Show only first row Show all	>Lus10024704 pacid=23161630 polypeptide=Lus10024704 locus=Lus10024704.g ID=Lus10024704.BGIv1.0 annot-version=v1.0 ATGGAGTTCACGGTTGCTGCTGTTGTTCTTGTTCATTGCTCTCTCCCTGTGGCTATTAACTACTACTCGAAGCTGAATCTCTCAATCTTCCATCGTCGTG CCCTTTGCTCGACGGTCTTGAATCCAAGTTGTCGTAAATTCTGTGAAATGGCTGAGGAGAGTGGGAGAAAACTGACGAGAAGGGACAGTCTTTTGGAAAT TGAGGCAAATGCTAGAAAATGGTGGGACAAGAAAGATGTTTTCAGAGCTGAGCCTGGTGAAAGGCTTCCTGGACCAGGGGAGAAGTTCTTTGGAAACTTT CCATTCCCATACATGAATGGATTTTTGCATCTTGGACATGCATTCTCTCTTTCGAAACTGGAGTTTGCTGCAGCTTATCATAGATTGAAGGGTGCCAATG TTCTTCTTCCGTTTGGCTTCCACTGCACTGGCATGCCCATAAAGGCTTCTGCTGATAAGCTTCGACGCGAAATTCAACAATTTGGTAACCCACCTGTATT CCCTGGTCCATCTGAGGAGCGAGAAGAACCGAAACCGGAGCAAGGGGATGAAAATGCATCTGGTCAACCTAGTAAGTTCAAGGGCAAGAAGTCCAAGGCT GCATCTAAATCCGGTGGACAAGTGTTCCAGTGGGAGATCATGCGTAGTTTTGGGCTCTCTGATAGCGAGATTGCCAAGTTTCAGGACCCATACCAGTGGC TAAGGTTTTTCCCACCATTGGCAATGGAGGATCTCAAGGCTTTTGGACTTGGTTGTGACTGGAGGCGCTCTTTTGTGACCACTGATATCAACCCATATTT TGATTCCTTTGTGCAGTGGCAGATGAGGAAGCTGTATGCTATGGGTAAGATTGTGAAGGATGTTAGATACACAATCTACTCGCCCTTAGATGGTCAGCCG TGTGCAGATCATGACAGGGCATCGGGTGAAGGAGTTCTACCGCAGGATTATACTCTAATAAAAATGGAGGTCTTAAAGCCATTTCCACTGAAGTTAGGTC CTCTAGAGGGAAAGAATGTTTACCTAGCAGCTGCTACATTGAGGCCGGAGACCATGTACGGGCAGACTAATGCTTGGGTGTTGCCCGAGGGGGAATACGG AGCCTATGAAATTAATGAAACTGATGTGTTTGTTATTACACACAGATCGGCCCTTAACCTTGCATATCAAAACTTTTCGAAGATTCCTCAGAAACCCACT TGCTTGTTGGAGCTCACTGGTTATGATATGTTGGAGCTCACTGGGTATGATCTTATTGGGCTTCCGTTGAGCTCTCCTCTTTCCTGCAACAAAGTCATAT ATGCTCTTCCAATGTTAACCATCTTAACGGACAAAGGTACAGGGATTGTCACCAGTGTTCCTAGTGATGCACCTGACGATTATATGGCTCTTCATGATTT GAAAGCAAAACCTGCTTTTAGGGCAAAGTTCGGTGTGAAGGATGAGTGGGTACTGCCCTATGAGGTAGTGCCAATTATTAACATTCCAGAATTTGGGGAT AAGGCTGCTGAAAAAGTCTGCTTGGATCTGAAGATTAAGAGCCAGAACGAGAAGGACAAGCTTTCTGAAGCTAAGCGGTTGACATACTTGAAAGGGTTTA CAGATGGAACAATGATTGTTGGTAAATATGCAGGGATGAAGGTCCAAGAAGCAAAGCCATTGCTTAGAACCGAACTTATCGAGACAGGGCAGGGAATTAT GTATAGTGAGCCTGAAAAGCGAGTTATGTCAAGGTCAGGGGATGAATGTGTCGTGGCACTTACAGATCAATGGTACATAATCTATGGAGAAGCAGAGTGG AAGAAGTTGGCGGAGGAATGCCTAAGCAACATGAACCTGTATTCTGACGAGACACGGCATGGATTTGAGCACACTTTGAGCTGGCTGAATCAGTGGGCTT GTTCAAGATCGTTCGGTCTTGGGACTCGCATTCCCTGGGATAAAGAATTCCTTGTTGAATCTTTGTCAGACTCGACTATTTACATGGCTTACTATACTGT TTCACATATCCTACATAAGGAGGACATGTATGGTATCAACAAATCTCATCCCATTCAACCTTCGCAATTGACTGATGAAGTATGGAACTTCATCCTCTGT GATGGTCCACATCCCGAATCTTCGGATATCCCTACAGCTGTCCTTGAAAAGATGAAACAGGAATTTAACTATTGGTACCCCTATGATTTGCGAGTCTCTG GAAAGGACCTTATCCAGAATCACTTGACATTCTCCATATACAACCATGTAGCAATCATGGCTAAGAAACACTGGCCTCGTGGATTCAGGTGTAATGGGCA CATCATGCTCAATTCCGAGAAGATGTCGAAGTCGACTGGAAATTTCAGAACACTACGCGAGGCTATCCTGGAATTCTCTGCTGATGCGACGAGATTCTCG CTGGCTGATGCTGGAGACGGTGTTGATGATGCTAACTTTGTGTTTGAAACTGCCAACTCTGCTATCCTTCGGCTTACCAAAGAGATTGCATGGATGGAAG AAGTTCTAGCTGCAGAATCCACTCTGAGGACTGGGCCTCCATCAACTTATGCCGATAAGGTGTTTGAGAATGAGATAAACATTGCAGTTAAGATGACTGA GCAGAATTACAGTGATTGTATGTTTAGAGAGGCATTGAAGACCGGTTTTTACGATCTTCAAACAGCCAGAGACGAGTATAGATTCTCGTGTGGCAGCGGT GGCATGAACCGTGACCTAGTTTTGCGGTTTATGGATGTGCAGACTCGTCTCATCACTCCTATTTGTCCACACTATGGAGAACACGTATGGAGGGTGCTTT TAAAGAAGGAAGGGTATGCGGTTAAAGCCGGCTGGCCGCTAGCTGGTTCTCCCCGTCTGAAGCTGAAAGCTGCCAACAAATACTTGCAGGACTCCATTGT TCTAATGAGGAAGTTGCTCCAGAAACAAATATCGGGCTCAAAGAAAGGCAACAAGAAGGGAGCGCCAGAAACCACCATCACAACAGAGAGCAAAGTAATC ACTGGTTTGATATATGTGAACGAGCAGTTCGATGACCAGAAAGCAATATGCTTGAGGATTCTACAGAGCAAGTTCGACAGCGAAACCCGTACGTTTGCAC CCAATGAGGAGATATTAAAGGCATTGCAGGAGAGTCCACTAGGTCAAGGTGGGAACTTTAAGCAAGTCCAGAAGCAGTACATGCCATTCTTGAGATTCAA AAAGGATGAAGCGGTTGCGATTGGCGCTCAGGCATTGGATCTGAAGCTACCCTTCGGGGAGATTGATGTCCTGAAGGAGAACCTGGAGTTGATCAAGAGA CAACTCGGACTTGAAGAGGTCGAAGTTCTATCTGCATCGAATCCCGATCACCGTGCTCGAGCTGGCTCCCTTGCCACCCTCTTGACTCAGAATCCCCCAT CACCTGGAAACCCCACGGCTATCTTCTTGACCAGGTCAGTCAAAACCCCAATTCGCACTGAATAA
AA sequence Show only first row Show all	>Lus10024704 pacid=23161630 polypeptide=Lus10024704 locus=Lus10024704.g ID=Lus10024704.BGIv1.0 annot-version=v1.0 MEFTVAAVVLVHCSLPVAINYYSKLNLSIFHRRALCSTVLNPSCRKFCEMAEESGRKLTRRDSLLEIEANARKWWDKKDVFRAEPGERLPGPGEKFFGNF PFPYMNGFLHLGHAFSLSKLEFAAAYHRLKGANVLLPFGFHCTGMPIKASADKLRREIQQFGNPPVFPGPSEEREEPKPEQGDENASGQPSKFKGKKSKA ASKSGGQVFQWEIMRSFGLSDSEIAKFQDPYQWLRFFPPLAMEDLKAFGLGCDWRRSFVTTDINPYFDSFVQWQMRKLYAMGKIVKDVRYTIYSPLDGQP CADHDRASGEGVLPQDYTLIKMEVLKPFPLKLGPLEGKNVYLAAATLRPETMYGQTNAWVLPEGEYGAYEINETDVFVITHRSALNLAYQNFSKIPQKPT CLLELTGYDMLELTGYDLIGLPLSSPLSCNKVIYALPMLTILTDKGTGIVTSVPSDAPDDYMALHDLKAKPAFRAKFGVKDEWVLPYEVVPIINIPEFGD KAAEKVCLDLKIKSQNEKDKLSEAKRLTYLKGFTDGTMIVGKYAGMKVQEAKPLLRTELIETGQGIMYSEPEKRVMSRSGDECVVALTDQWYIIYGEAEW KKLAEECLSNMNLYSDETRHGFEHTLSWLNQWACSRSFGLGTRIPWDKEFLVESLSDSTIYMAYYTVSHILHKEDMYGINKSHPIQPSQLTDEVWNFILC DGPHPESSDIPTAVLEKMKQEFNYWYPYDLRVSGKDLIQNHLTFSIYNHVAIMAKKHWPRGFRCNGHIMLNSEKMSKSTGNFRTLREAILEFSADATRFS LADAGDGVDDANFVFETANSAILRLTKEIAWMEEVLAAESTLRTGPPSTYADKVFENEINIAVKMTEQNYSDCMFREALKTGFYDLQTARDEYRFSCGSG GMNRDLVLRFMDVQTRLITPICPHYGEHVWRVLLKKEGYAVKAGWPLAGSPRLKLKAANKYLQDSIVLMRKLLQKQISGSKKGNKKGAPETTITTESKVI TGLIYVNEQFDDQKAICLRILQSKFDSETRTFAPNEEILKALQESPLGQGGNFKQVQKQYMPFLRFKKDEAVAIGAQALDLKLPFGEIDVLKENLELIKR QLGLEEVEVLSASNPDHRARAGSLATLLTQNPPSPGNPTAIFLTRSVKTPIRTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10024704 [exp]	0	1
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	1.4	0.9629
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10010782 [exp]	2.0	0.9506
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10037145 [exp]	5.4	0.9071
AT3G07660			Kinase-related protein of unkn...		Lus10036414 [exp]	5.9	0.9311
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	6.9	0.9098
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	7.2	0.9204
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	8.7	0.9353
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	9.2	0.9323
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	9.5	0.9170
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	10.1	0.9357

Compare expression of checked genes

Lus10024704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.