Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25610 58 / 9e-12 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G49320 51 / 3e-09 ATUSPL1 unknown seed protein like 1 (.1) AT1G23760 41 / 2e-05 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1) AT1G70370 39 / 8e-05 PG2 polygalacturonase 2 (.1.2) AT1G60390 36 / 0.0007 PG1 polygalacturonase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032324 [exp] 106 / 6e-30 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10007011 [exp] 97 / 3e-26 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10006667 [exp] 96 / 2e-25 AT1G49320 196 / 4e-61 unknown seed protein like 1 (.1) Lus10006665 [exp] 91 / 2e-23 AT1G49320 177 / 3e-53 unknown seed protein like 1 (.1) Lus10026333 [exp] 79 / 1e-19 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10042332 [exp] 67 / 2e-15 AT1G49320 115 / 7e-38 unknown seed protein like 1 (.1) Lus10006555 [exp] 61 / 4e-14 AT5G25610 122 / 8e-35 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10022114 [exp] 65 / 6e-14 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007674 [exp] 64 / 1e-13 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114600 [exp] 82 / 1e-20 AT1G49320 220 / 5e-71 unknown seed protein like 1 (.1) Potri.018G036700 [exp] 58 / 1e-11 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 57 / 2e-11 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243700 [exp] 57 / 2e-11 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G153100 [exp] 56 / 8e-11 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.009G114300 [exp] 52 / 1e-09 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.T012500 [exp] 45 / 3e-07 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 44 / 1e-06 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 42 / 4e-06 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 42 / 4e-06 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [flax] [poplar] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Lus10024706 pacid=23161621 polypeptide=Lus10024706 locus=Lus10024706.g ID=Lus10024706.BGIv1.0 annot-version=v1.0 ATGGTTTCATTGGCAAGTAGTGACAATGGAGACAGAGTTGATGCTCTTGCAATGTGTCATTCGGACACTTATCAATGGGGCAAAGGACATATCTCGTTTA AGGTGCTTGATGTTGAGCCTGGACAAACTGAAGTCTTCCATTTCTCCCCTGAACATCATCTCGTTTTCGTTCCTGCAGCCACAACCATTAACTCAGAGTC ATCCATCTGA
AA sequence Show only first row Show all	>Lus10024706 pacid=23161621 polypeptide=Lus10024706 locus=Lus10024706.g ID=Lus10024706.BGIv1.0 annot-version=v1.0 MVSLASSDNGDRVDALAMCHSDTYQWGKGHISFKVLDVEPGQTEVFHFSPEHHLVFVPAATTINSESSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	0	1
AT3G15810			Protein of unknown function (D...		Lus10006656 [exp]	1.0	0.8449
AT5G17680			disease resistance protein (TI...		Lus10012852 [exp]	3.0	0.8134
					Lus10020479 [exp]	4.5	0.7523
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	6.0	0.8449
AT1G01490			Heavy metal transport/detoxifi...		Lus10024672 [exp]	6.5	0.7625
					Lus10038003 [exp]	8.0	0.8196
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	8.8	0.8311
					Lus10019466 [exp]	8.9	0.7592
AT3G46350			Leucine-rich repeat protein ki...		Lus10030627 [exp]	9.9	0.6225
AT4G12010			Disease resistance protein (TI...		Lus10008320 [exp]	10.7	0.6592

Compare expression of checked genes

Lus10024706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.