Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60750 399 / 1e-137 CAAX amino terminal protease family protein (.1) AT1G14270 95 / 3e-21 CAAX amino terminal protease family protein (.1.2.3.4) AT2G20725 74 / 2e-14 CAAX amino terminal protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032326 [exp] 548 / 0 AT5G60750 402 / 1e-139 CAAX amino terminal protease family protein (.1) Lus10017536 [exp] 486 / 5e-172 AT5G60750 422 / 2e-148 CAAX amino terminal protease family protein (.1) Lus10028751 [exp] 484 / 5e-171 AT5G60750 429 / 4e-151 CAAX amino terminal protease family protein (.1) Lus10036748 [exp] 91 / 8e-20 AT1G14270 400 / 6e-140 CAAX amino terminal protease family protein (.1.2.3.4) Lus10037179 [exp] 84 / 1e-17 AT1G14270 347 / 8e-121 CAAX amino terminal protease family protein (.1.2.3.4) Lus10032327 [exp] 78 / 6e-15 AT2G30070 635 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10018585 [exp] 58 / 4e-09 AT2G20725 235 / 3e-76 CAAX amino terminal protease family protein (.1) Lus10039818 [exp] 50 / 1e-06 AT2G20725 210 / 5e-68 CAAX amino terminal protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133800 [exp] 461 / 2e-162 AT5G60750 461 / 6e-164 CAAX amino terminal protease family protein (.1) Potri.001G097500 [exp] 459 / 2e-161 AT5G60750 460 / 2e-163 CAAX amino terminal protease family protein (.1) Potri.008G147600 [exp] 94 / 6e-21 AT1G14270 362 / 1e-124 CAAX amino terminal protease family protein (.1.2.3.4) Potri.019G101100 [exp] 69 / 1e-12 AT2G20725 224 / 5e-72 CAAX amino terminal protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10024708 pacid=23161511 polypeptide=Lus10024708 locus=Lus10024708.g ID=Lus10024708.BGIv1.0 annot-version=v1.0 ATGTTAAGCTACTGCTGCTCTCATCCTCGGACTCTCGTCCCTTCATTTTCCACCCAGTTTAGCGCTCTTAACCACCGTCCTGGCAGCTCAGCTAGGAATC CGGCGATCCTCCAACCCAGTTCCAAGCTTCACAAGAATAAATGGAGGGTTTCATGTTCTAGCCAAGCAGCTTTCCCCCCTGCGAGTCCCAACTCCGATGG CGTTGAGAACTTGCTTCCCCACGAGCCATTGAAGCCAGAACCTGAACTTAATAGCTCAACTAATCCTAAGAAGGGTTGGATGCTGAAATTTCAACAGATG TTGAGCTACTGTTGCTCTCAATCCTTATCTCATCGCCCGATTCTCGTCCCTTCACTTTCCAGGAAGTTTACTGCTTTTAACCGCCCTGGCAGCTCATCTC TTGCAGCTAGGAATCCAAGGATCCTTCAATCCAATTCCAAGCTTCACAAGAATAGATGGACAGTTTCGTGTTTTAGACAAGAAGATTTTACTCCTGCTAC TAAGTCTGATGGATTTGAGCACTTTCTTCCTGAAGAGCCATTGAAGCCAGAACCTGAACTTCCTGCTACTAGGTATACTCATGCTGAAAGGGATTGGATA TTGAACTTCAAAAAGGCAGTAGGTGTAGTGCGGAAGGCAGTTGGAAGTCGATGGACTGTACCATGGAGTGCAGATACCATAATCCAGGTAATGCTTTTAT GGGTTGTCTCATTCTGGTTCATAGGGTCCTGGGTGGTCCCTTTTGCAGCCCACATGGCAGGATTGAATAAAGAATCTCTGACATTCAGAGGACAAGCCTT ATTCAGCCTAGTAACCGACGTCACCGAAGGTCTCGCCGGCATCGCAATCCTTCTTCGTTGCCTTTCAAGGTTCCGTCCCCTTTCATCGGATTGGTTTAGA TTCAGCCTAAAAGGGAACTGGATGATTGATGTCGCTCTCGGGTGCCTCACATTTCCCCTTGTCAACCGGCTCTCACAATTCAATCTCAGCCTACTGCCCA TTCTTCCCTCCGCACCCGCCACACTCTCAAGCGTGGAGCAATCAATCGCAGCACGAGATCCAGTGGCGATGGCTATTTACGCGATGGTAGTATCGGTTTG CGCTCCTTTATGGGAGGAGATCGTCTTCCGGGGCTTCCTCCTCCCGTCCTTGACGAAATACATGCCGGTATGGTGCGCGATTCTAGTGAGCTCGGTCGCC TTTGCGCTTGCTCATTTCAATGTACAGAGGATGCTACCCCTTATATTCCTCGGCGTGGTTATGGGCGTCATTTTTGCAAGGTCGAGGAACTTGCTGCCGC CCATGCTTCTGCACAGCTTGTGGAACGGTTTCGTGTTCCTAGATCTGATGAAATAG
AA sequence Show only first row Show all	>Lus10024708 pacid=23161511 polypeptide=Lus10024708 locus=Lus10024708.g ID=Lus10024708.BGIv1.0 annot-version=v1.0 MLSYCCSHPRTLVPSFSTQFSALNHRPGSSARNPAILQPSSKLHKNKWRVSCSSQAAFPPASPNSDGVENLLPHEPLKPEPELNSSTNPKKGWMLKFQQM LSYCCSQSLSHRPILVPSLSRKFTAFNRPGSSSLAARNPRILQSNSKLHKNRWTVSCFRQEDFTPATKSDGFEHFLPEEPLKPEPELPATRYTHAERDWI LNFKKAVGVVRKAVGSRWTVPWSADTIIQVMLLWVVSFWFIGSWVVPFAAHMAGLNKESLTFRGQALFSLVTDVTEGLAGIAILLRCLSRFRPLSSDWFR FSLKGNWMIDVALGCLTFPLVNRLSQFNLSLLPILPSAPATLSSVEQSIAARDPVAMAIYAMVVSVCAPLWEEIVFRGFLLPSLTKYMPVWCAILVSSVA FALAHFNVQRMLPLIFLGVVMGVIFARSRNLLPPMLLHSLWNGFVFLDLMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60750			CAAX amino terminal protease f...		Lus10024708 [exp]	0	1
AT5G60750			CAAX amino terminal protease f...		Lus10032326 [exp]	1.7	0.9331
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	2.0	0.9357
AT2G23780			RING/U-box superfamily protein...		Lus10016796 [exp]	2.2	0.9302
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10040069 [exp]	2.4	0.9371
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	3.5	0.9291
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	4.0	0.9303
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	5.7	0.9183
AT3G53810			Concanavalin A-like lectin pro...		Lus10016506 [exp]	6.0	0.9147
AT1G70420			Protein of unknown function (D...		Lus10013011 [exp]	6.9	0.9240
AT4G33920			Protein phosphatase 2C family ...		Lus10002110 [exp]	7.3	0.9217

Compare expression of checked genes

Lus10024708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.