Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18440 259 / 1e-80 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 245 / 4e-75 Aluminium activated malate transporter family protein (.1) AT2G17470 237 / 2e-72 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT1G68600 231 / 3e-70 Aluminium activated malate transporter family protein (.1) AT1G25480 228 / 5e-69 Aluminium activated malate transporter family protein (.1) AT5G46600 192 / 1e-55 Aluminium activated malate transporter family protein (.1) AT4G17970 187 / 1e-53 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT1G08440 181 / 9e-52 Aluminium activated malate transporter family protein (.1) AT5G46610 182 / 1e-51 Aluminium activated malate transporter family protein (.1.2.3) AT1G08430 179 / 4e-51 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024711 [exp] 262 / 5e-86 AT3G18440 76 / 9e-16 aluminum-activated malate transporter 9 (.1) Lus10017222 [exp] 257 / 1e-83 AT3G18440 80 / 5e-17 aluminum-activated malate transporter 9 (.1) Lus10034301 [exp] 251 / 1e-77 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10027657 [exp] 248 / 3e-76 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10021694 [exp] 214 / 2e-63 AT1G25480 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10032328 [exp] 192 / 1e-58 AT3G18440 102 / 1e-24 aluminum-activated malate transporter 9 (.1) Lus10000898 [exp] 199 / 5e-58 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10004556 [exp] 189 / 2e-54 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 187 / 2e-53 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097300 [exp] 552 / 0 AT3G18440 307 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.003G134100 [exp] 537 / 0 AT3G18440 306 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.010G127400 [exp] 265 / 3e-83 AT3G18440 588 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.015G053400 [exp] 256 / 2e-79 AT3G18440 681 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.008G118600 [exp] 254 / 8e-79 AT1G25480 646 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.001G144300 [exp] 210 / 2e-62 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.009G017800 [exp] 193 / 2e-56 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 187 / 7e-54 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 182 / 2e-52 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 178 / 8e-51 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10024710 pacid=23161572 polypeptide=Lus10024710 locus=Lus10024710.g ID=Lus10024710.BGIv1.0 annot-version=v1.0 ATGAATGGAAAGAAGGGAAGTTACCATGTTGAGAACAACACACCACAACAATCAATGGGAACTCCTAAACCAAAGATGGAATCATCATCTCCATTTGCAT CTTGCCAAGTTTGGATGAGGAGTGTGTTGGATTTCGCCAAGGAAGACGGCAATAATAGGGTCAAATTCTCATTCAAAGTTGCACTAGCTATTCTACTTGT GTCATTGCTTATCTTGGTCAGAGCACCTTATGACATATTTGGCACCGACATCATCTGGTCCATCCTCACCGTTGCGGTCATGTTTGAATACACCGTTGGT GCAACGTTCAATCGAGGATTCAACCGCACACTTGGAAGTTTGCTAGCCGGTATATTGGCTCTTGCAGTTGGTCAGCTAGCTCTATGCTCAGGGAGGGTTG GAGAGCCCATCATAATTGGCATAAGCATCTTCTTTGTTGGTGCCATTACATCATTCATGAAACAATGGCCATCACTTGTCCCCTACGAGTACGGATTCAG GGTCGTCCTCTTCACCTACTGCCTGATCATAGTCTCCGGATACCGGATGGGGAACCCAATCAGAACTGCCATGGACCGGCTTTACTCGATCGCCATTGGC GGGTTTGTAGCCCTTCTTGTAAATGTACTAGTGTTTCCCATTTGGGCAGGGGAGCAGCTCCATAAGGAGCTTGTTGATAGCTTCATTGCAGTTGCAGATT CACTCGAAGACTGTGTTGAGAAGTACTTGGAAGATGAGAGACTAGAGCATCCCGAGTTCACCAGTACAGTGATGGATGAGTTCCTGGATGAGCCTGCGTA TAAGAAATGCCAAACCATCCTCAATTCGTCTGTGAAACTCGAATCTTTGGCGAACTCGGCGAAATGGGAGCCGCCACACGGAAGGTTTAGACAATTCTTC TATCCATGGTCAGAGTACGTTAAAGTTGGTGCTGTACTCAGATATTGTGCTTATGAAGTCATGGCACTTCATGGTGTTCTTCATTCTGAGATTCAGGCGC CATATAATCTGAGGGTTGCATTCAAGCCCGAAATTCGTGAAACAGTCACTCGATCCGCAGAGCTAATCCGAAACATGGGAGACGAGATCAACAACATGAA GAGAAACCTCAAAACTTCGGTGCTAAAAATGGTCCACAGTTCGGCTGAGCGGCTCCAACGCACCATCGACGTGCACTCTTACTTGTTTTTCGTGTCAAAT GGCAATGAAATCGATAAGCTGTCACCAAAGGCTACAACTACTGTGGAGACAGACCATGAGAAGATGGGGAGGAAGTAG
AA sequence Show only first row Show all	>Lus10024710 pacid=23161572 polypeptide=Lus10024710 locus=Lus10024710.g ID=Lus10024710.BGIv1.0 annot-version=v1.0 MNGKKGSYHVENNTPQQSMGTPKPKMESSSPFASCQVWMRSVLDFAKEDGNNRVKFSFKVALAILLVSLLILVRAPYDIFGTDIIWSILTVAVMFEYTVG ATFNRGFNRTLGSLLAGILALAVGQLALCSGRVGEPIIIGISIFFVGAITSFMKQWPSLVPYEYGFRVVLFTYCLIIVSGYRMGNPIRTAMDRLYSIAIG GFVALLVNVLVFPIWAGEQLHKELVDSFIAVADSLEDCVEKYLEDERLEHPEFTSTVMDEFLDEPAYKKCQTILNSSVKLESLANSAKWEPPHGRFRQFF YPWSEYVKVGAVLRYCAYEVMALHGVLHSEIQAPYNLRVAFKPEIRETVTRSAELIRNMGDEINNMKRNLKTSVLKMVHSSAERLQRTIDVHSYLFFVSN GNEIDKLSPKATTTVETDHEKMGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10024710 [exp]	0	1
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10024711 [exp]	1.0	0.9046
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10014613 [exp]	2.4	0.8556
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	7.5	0.8688
AT2G37370			unknown protein		Lus10009063 [exp]	11.0	0.8397
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	14.5	0.8394
					Lus10030082 [exp]	14.7	0.7902
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	17.0	0.8010
					Lus10003753 [exp]	17.5	0.8010
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031849 [exp]	17.5	0.7886
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	17.7	0.8348

Compare expression of checked genes

Lus10024710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.