Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017222 [exp] 285 / 2e-97 AT3G18440 80 / 5e-17 aluminum-activated malate transporter 9 (.1) Lus10024710 [exp] 263 / 3e-86 AT3G18440 296 / 1e-94 aluminum-activated malate transporter 9 (.1) Lus10032328 [exp] 112 / 1e-29 AT3G18440 102 / 1e-24 aluminum-activated malate transporter 9 (.1) Lus10034301 [exp] 52 / 1e-07 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097300 [exp] 209 / 3e-64 AT3G18440 307 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.003G134100 [exp] 203 / 2e-62 AT3G18440 306 / 2e-97 aluminum-activated malate transporter 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10024711 pacid=23161539 polypeptide=Lus10024711 locus=Lus10024711.g ID=Lus10024711.BGIv1.0 annot-version=v1.0 ATGGTAAATGTGATATCGAGGAAAACGACTAAGAAGAAATCTTATTCACTCGAAGAATGTGTTGAGAAGTATTTGGAAGACGAGGGACTAGAGCATCCCG AGTTCACCAGTACAGTGATGGATGAGTTCCTGGATGAGCCTGCGTATAAGAAATGCCAAACCATCCTCAATTCGTCTGTGAAACTCGAATCTTTGGCGCC ATATAATCTGAGGGTTGCATTCAAGCCCGAAATTCGTGAAACAGTCACTCGATCCGCAGAGCTAATCCGAAACATGGGAGACGAGATCAACAACATGAAG AGAAACCTCAAAACTTCGGTGCTAAAAATGGTCCACAGTTCGGCTGAGCGGCTCCAACGCACCATCGACGTGCACTCTTACTTGTTTTTCGTGTCAAATG GCAATGAAATCGATAAGCTGTCACCAAAGGCTACAGCTACTGTGGAGACAGACCATGAGAAGATGGTGAGGAAGCAGTCGAGAAGGATGCACTCGTGGCC GTCGAGGGAGATGGGTGGTCTCGAGGACGAGGATGATGTTGTAATGCAAAGAGTTGGCTACGGTACGGAATTCCTGCCACGGATGAGGACTCTGGAGAGC ACAGCTGCACTTTCACTAGCAACTTTTACGTCGCTGTTAATTGAGTTTGTTGCTAGGCTTGATCACTTGGTTGAAGCTGTTAATGAACTCTCCAGCATGG CCAGTTTCAAGCCTGAGGACCTTGTGTAG
AA sequence Show only first row Show all	>Lus10024711 pacid=23161539 polypeptide=Lus10024711 locus=Lus10024711.g ID=Lus10024711.BGIv1.0 annot-version=v1.0 MVNVISRKTTKKKSYSLEECVEKYLEDEGLEHPEFTSTVMDEFLDEPAYKKCQTILNSSVKLESLAPYNLRVAFKPEIRETVTRSAELIRNMGDEINNMK RNLKTSVLKMVHSSAERLQRTIDVHSYLFFVSNGNEIDKLSPKATATVETDHEKMVRKQSRRMHSWPSREMGGLEDEDDVVMQRVGYGTEFLPRMRTLES TAALSLATFTSLLIEFVARLDHLVEAVNELSSMASFKPEDLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10024711 [exp]	0	1
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10024710 [exp]	1.0	0.9046
AT2G47880			Glutaredoxin family protein (....		Lus10005937 [exp]	4.0	0.7808
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031849 [exp]	6.7	0.7851
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10014613 [exp]	11.0	0.7718
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000547 [exp]	13.1	0.7921
AT1G11340			S-locus lectin protein kinase ...		Lus10013246 [exp]	24.3	0.6997
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10010242 [exp]	24.5	0.6884
AT1G11570		NTL	NTF2-like (.1.2)		Lus10006762 [exp]	29.4	0.7641
AT3G25820		ATTPS-CIN	"terpene synthase-like sequenc...		Lus10006356 [exp]	30.0	0.7608
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10029947 [exp]	36.7	0.7400

Compare expression of checked genes

Lus10024711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.