Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64140 298 / 2e-97 unknown protein AT5G64550 220 / 1e-67 loricrin-related (.1) AT5G09670 216 / 2e-66 loricrin-related (.1.2) AT4G12020 161 / 1e-44 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032329 [exp] 505 / 1e-177 AT1G64140 690 / 0.0 unknown protein Lus10019307 [exp] 235 / 4e-73 AT5G64550 639 / 0.0 loricrin-related (.1) Lus10011515 [exp] 234 / 7e-73 AT5G64550 652 / 0.0 loricrin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097200 [exp] 369 / 5e-124 AT1G64140 718 / 0.0 unknown protein Potri.003G134200 [exp] 365 / 9e-123 AT1G64140 690 / 0.0 unknown protein Potri.001G206600 [exp] 242 / 1e-75 AT5G64550 675 / 0.0 loricrin-related (.1) Potri.003G023300 [exp] 236 / 1e-73 AT5G64550 716 / 0.0 loricrin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024712 pacid=23161538 polypeptide=Lus10024712 locus=Lus10024712.g ID=Lus10024712.BGIv1.0 annot-version=v1.0 ATGTTCTGCAAAGCACATGGTGGTGGGAAGCGCTGCACAGCTCCTGGTTGCACTAAGGGAGCCGAGGGGAGCACCCCTTTTTGCAAGGGTCACGGAGGAG GGAAAAGGTGTGCCTTCCAAGGTGGTGGGATTTGTTCAAAGAGTGTCCATGGAGGAACTAACTTCTGTGTAGCACATGGTGGTGGCAAGAGGTGTGCTGT TCCTGAATGCACAAGAAGTGCAAGAGGGCGGACCGACTTTTGTGTTCGTCATGGTGGCGGCAAGCGATGCAAGTTTGAAGGATGTGGGAAAAGTGCCCAA GGCAGTACAGATTTCTGCAAGGCACACGGTGGAGGAAAGAGATGCTCTTGGGGTCATCCAGGGTCGGGATACGGTGTTCAGCCTACTACTGCTTGCAACT CTTTTGCGAGGGGCAAAACCGGTCTATGTGCTCTACATAGTGGTCTGGTGCAGGATAGACGGGTCCATGGTGGTATCACTTTGGGTACTATGGTCCAGGA TCCGAAAGCCAGCCGCCGGACAGGCAAGACGAAAGAAGTTGCTGCTTCAGATGACATGATTGTAGATGCTGCAAATGTGGGAGGAATAACTGCTGCTGTC TCGTTAGATGGAACCAATACAGAGGCAAAAGGAAACCAAATCGTTGGCAGGGAAGGAAGAGTTCATTCGTCGAAGCCTGCATCTGTACCAGAAGGCAGGG TTCATGGTGGGAGTTTGATGGCGTTGCTGGCAAATGGTTCTGGTACTGGCTCAAGCAGAGAATATCAGCATGCGCAATACCTGTCAAGTGGTGATTACTG A
AA sequence Show only first row Show all	>Lus10024712 pacid=23161538 polypeptide=Lus10024712 locus=Lus10024712.g ID=Lus10024712.BGIv1.0 annot-version=v1.0 MFCKAHGGGKRCTAPGCTKGAEGSTPFCKGHGGGKRCAFQGGGICSKSVHGGTNFCVAHGGGKRCAVPECTRSARGRTDFCVRHGGGKRCKFEGCGKSAQ GSTDFCKAHGGGKRCSWGHPGSGYGVQPTTACNSFARGKTGLCALHSGLVQDRRVHGGITLGTMVQDPKASRRTGKTKEVAASDDMIVDAANVGGITAAV SLDGTNTEAKGNQIVGREGRVHSSKPASVPEGRVHGGSLMALLANGSGTGSSREYQHAQYLSSGDY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64140			unknown protein		Lus10024712 [exp]	0	1
AT4G33565			RING/U-box superfamily protein...		Lus10012745 [exp]	1.4	0.9178
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10003560 [exp]	2.4	0.9157
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	3.5	0.9156
					Lus10020547 [exp]	3.6	0.8892
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	4.9	0.9124
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10017117 [exp]	5.9	0.8975
AT1G67350			unknown protein		Lus10037020 [exp]	8.0	0.8829
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	8.0	0.8964
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10020265 [exp]	8.4	0.8886
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10036402 [exp]	9.0	0.8962

Compare expression of checked genes

Lus10024712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.