Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64150 301 / 6e-100 Uncharacterized protein family (UPF0016) (.1) AT4G13590 135 / 3e-36 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G68650 81 / 2e-17 Uncharacterized protein family (UPF0016) (.1) AT1G25520 78 / 2e-16 Uncharacterized protein family (UPF0016) (.1) AT5G36290 76 / 4e-15 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032330 [exp] 650 / 0 AT1G64150 333 / 8e-113 Uncharacterized protein family (UPF0016) (.1) Lus10023685 [exp] 133 / 3e-35 AT4G13590 443 / 1e-156 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10011763 [exp] 133 / 4e-35 AT4G13590 429 / 6e-151 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10035040 [exp] 87 / 2e-18 AT1G25520 339 / 4e-116 Uncharacterized protein family (UPF0016) (.1) Lus10026995 [exp] 80 / 1e-16 AT5G36290 401 / 5e-142 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10034293 [exp] 76 / 1e-15 AT1G25520 349 / 2e-123 Uncharacterized protein family (UPF0016) (.1) Lus10041478 [exp] 72 / 2e-14 AT1G25520 327 / 1e-114 Uncharacterized protein family (UPF0016) (.1) Lus10020195 [exp] 66 / 2e-12 AT5G36290 321 / 5e-112 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G134300 [exp] 377 / 3e-129 AT1G64150 344 / 6e-117 Uncharacterized protein family (UPF0016) (.1) Potri.003G174600 [exp] 137 / 1e-36 AT4G13590 369 / 2e-127 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.001G053600 [exp] 132 / 9e-35 AT4G13590 417 / 5e-146 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.019G116100 [exp] 78 / 2e-16 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.010G128400 [exp] 77 / 5e-16 AT1G25520 335 / 1e-117 Uncharacterized protein family (UPF0016) (.1) Potri.008G117900 [exp] 77 / 7e-16 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.013G086700 [exp] 74 / 1e-14 AT5G36290 322 / 8e-111 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.019G053400 [exp] 73 / 3e-14 AT5G36290 328 / 4e-113 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF01169 [flax] [poplar] UPF0016 Uncharacterized protein family UPF0016
Representative CDS sequence Show only first row Show all	>Lus10024713 pacid=23161649 polypeptide=Lus10024713 locus=Lus10024713.g ID=Lus10024713.BGIv1.0 annot-version=v1.0 ATGCGAAGCGTGGCGGTATCTGAAGGGCGTTTCATCCATCACCCACATTGTTCATTCCCACCGCCATGTCTATACAAGAAGCCCCTGGATTCCCGTATGC TCCCTCTAGGCCTTCCTTTCAATCTCCCATCTCTTGTCTCGTCCAGGTGTTCGAGAGAATTCCTCAGAGACCCTATTCAGGAATCAGTAGCGAGAGGGCT ACTTCTTCCCAAGGTTCTTTCGGATTCTGAGGATCCGGGAGCCAAGAATTGGCTAGGGACGGAAGAATTTGTTCGGATTATAGATGGCATTGCGAAGAGA ACTTCGTTGAAGGAGTTTGGCTCGGTGGAATCCTTCGTGTCACATGAGAGTTTGATGAAATTCATGTGGCTCTTTGGATATCTGATGTTACAGGGGTCTG ATCAGGCAGTTGCTGCTGTAACTGAGCTTGCGAGCAGTGGGTCGCAAACGATACCTTATATTGGAGACCTTGGTGACATTAGTACAGGTTTTGCTTCAGC ATTCTTGCTGATATTTTTCTCAGAGTTGGGTGACAAAACCTTTTTCATAGCGGCACTATTAGCAGCTAGGAATTCTGCTGCTGTTGTCTTTGCAGGAACC TTTGGCGCACTTGGGGTAATGACTGTCATATCTGTCGTACTTGGAAGAACTTTCCATTATGTGGATGAGATCCTTCCTTTCAGGTTTGGTGATACTGATT TGCCAATTGATGATATTGCTGCAGTATGCCTTCTGTATATGCCTTGTCAAGTAAACAACTTTCAAGCTAACTTGAACGAATATCAGGTCTATTTTGGGGT TTCAACATTGATTGATGCTTCTTCAAGTGATAGCATGAAAGCAGAAGATGAGCAGAAAGAGGCGGAAATAGCAGTTTCGGAGTTCTCAGGAGACGGTGCA GGCATTTTGTCTGCTGCCAATACCATTATCAGCACATTTGCTTTGGTTTTCGTTGCGGAATGGGGTGACAAATCTTTCTTCTCCACAATAGCACTTGCTG CTGCATCTTCGCCTCTTGGTGTCATCGCTGGATCCTTAGCTGGTCATGGCGTTGCGACTCTGATTGCCGTCTTAGGAGGTTCGTTACTTGGAACATTCCT ATCAGAAAAGGTACAAACTTTCTTCAACCCTTCATCTCCCCCTTCTTACGTGTATCTTCAAATGAGTGTCAATTTCAGAATTTGGAATTTCATTATCTGA
AA sequence Show only first row Show all	>Lus10024713 pacid=23161649 polypeptide=Lus10024713 locus=Lus10024713.g ID=Lus10024713.BGIv1.0 annot-version=v1.0 MRSVAVSEGRFIHHPHCSFPPPCLYKKPLDSRMLPLGLPFNLPSLVSSRCSREFLRDPIQESVARGLLLPKVLSDSEDPGAKNWLGTEEFVRIIDGIAKR TSLKEFGSVESFVSHESLMKFMWLFGYLMLQGSDQAVAAVTELASSGSQTIPYIGDLGDISTGFASAFLLIFFSELGDKTFFIAALLAARNSAAVVFAGT FGALGVMTVISVVLGRTFHYVDEILPFRFGDTDLPIDDIAAVCLLYMPCQVNNFQANLNEYQVYFGVSTLIDASSSDSMKAEDEQKEAEIAVSEFSGDGA GILSAANTIISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGSLAGHGVATLIAVLGGSLLGTFLSEKVQTFFNPSSPPSYVYLQMSVNFRIWNFII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64150			Uncharacterized protein family...		Lus10024713 [exp]	0	1
AT1G64150			Uncharacterized protein family...		Lus10032330 [exp]	1.0	0.9693
AT2G33180			unknown protein		Lus10023686 [exp]	4.2	0.9469
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	4.9	0.9439
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10031342 [exp]	5.5	0.9274
AT3G59780			Rhodanese/Cell cycle control p...		Lus10025587 [exp]	7.4	0.9369
AT4G29590			S-adenosyl-L-methionine-depend...		Lus10040550 [exp]	8.3	0.9454
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10036161 [exp]	9.5	0.8880
AT1G56050			GTP-binding protein-related (....		Lus10031209 [exp]	14.1	0.8941
AT3G25480			Rhodanese/Cell cycle control p...		Lus10005853 [exp]	16.4	0.9210
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10035361 [exp]	16.5	0.9051

Compare expression of checked genes

Lus10024713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.