Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64160 173 / 2e-55 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G23690 172 / 9e-55 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11210 152 / 3e-47 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11190 146 / 1e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11180 139 / 5e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 66 / 2e-13 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 64 / 1e-12 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 63 / 2e-12 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21100 62 / 3e-12 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49030 62 / 2e-11 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024715 [exp] 360 / 3e-129 AT4G23690 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10032331 [exp] 345 / 4e-123 AT4G23690 187 / 5e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10017538 [exp] 250 / 2e-85 AT4G23690 187 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10028749 [exp] 168 / 4e-53 AT1G64160 232 / 2e-78 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10017539 [exp] 165 / 5e-52 AT1G64160 238 / 9e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 74 / 1e-16 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025067 [exp] 72 / 2e-15 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 70 / 4e-15 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10032939 [exp] 70 / 4e-15 AT5G42500 139 / 1e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G142602 [exp] 289 / 6e-101 AT1G64160 181 / 3e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096800 [exp] 289 / 6e-101 AT1G64160 181 / 3e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134800 [exp] 287 / 4e-100 AT1G64160 188 / 4e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142501 [exp] 285 / 1e-99 AT1G64160 179 / 1e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096680 [exp] 285 / 2e-99 AT1G64160 178 / 2e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134600 [exp] 275 / 1e-95 AT1G64160 182 / 5e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142702 [exp] 252 / 2e-86 AT4G23690 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G097001 [exp] 252 / 2e-86 AT4G23690 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134400 [exp] 207 / 8e-69 AT1G64160 184 / 1e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096440 [exp] 194 / 4e-64 AT1G64160 119 / 1e-34 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10024714 pacid=23161554 polypeptide=Lus10024714 locus=Lus10024714.g ID=Lus10024714.BGIv1.0 annot-version=v1.0 ATGACTATCTCAAGAAGCAAGATTGCTCTCTTCTTCATCTTCTTCATCTACCTTTCCTCAACTTCTTCATCAGCCAAGAAGAAGCAACACGCTCCATGCA AGGAGCTAGTACTCTTCTTCCACGACATCATCTACAACGGCCAGAACAAGGCCAACGCCACCGCGGCCATCGTGGCGGCTCCCGAGGGCTCCAACCGGAC CATCCTGGCCGGCGAGTCCCATTTCGGGAACATAGCCGTATTCGATGACCCGATCACCCTCGACAACAACCTGCACTCTCCGCCCGTCGGCAGGGCTCAG GGGATGTACCTGTACGACACTAAGAACACGTTCACTGCCTGGTTGGGTTTCACTTTTTGTCTTAATAGTACGGAGCACCAAGGTACGATTAACTTCATGG GAGCCGACCCGCTTATGAACAAGACTAGGGATGTGTCGATTGTTGGTGGGACCGGCGACTTCTTTATGCACCGTGGGGTGGCGACCATCATGACGGACTC GTATGAAGGTGAAGTGTACTTTAGGCTTCGAGTTGACATGAAGTTCTACGACTGTTGGTGA
AA sequence Show only first row Show all	>Lus10024714 pacid=23161554 polypeptide=Lus10024714 locus=Lus10024714.g ID=Lus10024714.BGIv1.0 annot-version=v1.0 MTISRSKIALFFIFFIYLSSTSSSAKKKQHAPCKELVLFFHDIIYNGQNKANATAAIVAAPEGSNRTILAGESHFGNIAVFDDPITLDNNLHSPPVGRAQ GMYLYDTKNTFTAWLGFTFCLNSTEHQGTINFMGADPLMNKTRDVSIVGGTGDFFMHRGVATIMTDSYEGEVYFRLRVDMKFYDCW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23690			Disease resistance-responsive ...		Lus10024714 [exp]	0	1
AT4G23690			Disease resistance-responsive ...		Lus10024715 [exp]	1.0	0.9955
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10016720 [exp]	2.0	0.9861
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10036014 [exp]	3.5	0.9867
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10019461 [exp]	6.8	0.9880
					Lus10024873 [exp]	6.9	0.9783
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029368 [exp]	7.7	0.9813
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008917 [exp]	10.2	0.9857
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027480 [exp]	10.5	0.9752
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	12.3	0.9820
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10007235 [exp]	13.0	0.9728

Compare expression of checked genes

Lus10024714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.