Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23700 107 / 2e-27 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT5G41610 96 / 4e-23 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT1G64170 92 / 7e-22 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT3G17630 87 / 4e-20 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT2G13620 71 / 2e-14 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 58 / 4e-10 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G30240 56 / 1e-09 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT2G31910 56 / 2e-09 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G06970 54 / 8e-09 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT5G22900 54 / 1e-08 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032332 [exp] 300 / 7e-98 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10028748 [exp] 174 / 4e-53 AT5G41610 517 / 1e-178 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10017541 [exp] 171 / 2e-49 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10017540 [exp] 93 / 4e-22 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10035312 [exp] 77 / 1e-16 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 70 / 3e-14 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10024131 [exp] 62 / 1e-11 AT1G79400 580 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10026155 [exp] 59 / 2e-10 AT1G79400 265 / 1e-82 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10016403 [exp] 57 / 9e-10 AT3G52080 856 / 0.0 cation/hydrogen exchanger 28 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G134900 [exp] 145 / 2e-40 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 99 / 2e-24 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 99 / 2e-24 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 89 / 8e-21 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 88 / 1e-20 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.007G105200 [exp] 77 / 1e-16 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 64 / 3e-12 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.001G264600 [exp] 63 / 7e-12 AT3G52080 710 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.007G099000 [exp] 61 / 3e-11 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.003G194100 [exp] 60 / 8e-11 AT1G79400 597 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024716 pacid=23161659 polypeptide=Lus10024716 locus=Lus10024716.g ID=Lus10024716.BGIv1.0 annot-version=v1.0 ATGGCGGAGCATCCTGGAATCAGTCTGACGGTGGTTCGCTACTCTGGCAGCAGCCTAGGTCAAGGTCCGGAAGGAGAAATCGTGACCGTTGATTTGAGCG AGGGATTCGGATCATCGAGGTCTTCCGATGAGGAGTGTTTGGCTGAGGTCAGGAAAGGAATTGCAGGGGAAGAAGGATCGATTTGCTATCAGGAGGTGGC GGTGAAGAGCGCATCGGAGACAGCAGAGTCGATCCGAGGGTTCAGCAAGTGTAATCTGTTTCTGGTCGGGAGGATGCCGGAAGGCGCGGTGGCGGGGAGT TTGAGCGCGAAGATTGACTGCCCGGAGCTCGGACCGGTGGGGAATTTCTTGACGTCGCCGGAGTTCGTGACGTCGGCGTCGGTGCTGGTGGTGCAGCAGT ACGCAATTCCGACGGCGCCGCCGCGGCAAAGATCGATGAGTTCCCGAAAGGGGGGGGGGGTTGCGGGGGTGTCGGGGTTGGCGGCGGGCGATTTGGAAGA CAGTGGAATTGAAGGCGTGTGA
AA sequence Show only first row Show all	>Lus10024716 pacid=23161659 polypeptide=Lus10024716 locus=Lus10024716.g ID=Lus10024716.BGIv1.0 annot-version=v1.0 MAEHPGISLTVVRYSGSSLGQGPEGEIVTVDLSEGFGSSRSSDEECLAEVRKGIAGEEGSICYQEVAVKSASETAESIRGFSKCNLFLVGRMPEGAVAGS LSAKIDCPELGPVGNFLTSPEFVTSASVLVVQQYAIPTAPPRQRSMSSRKGGGVAGVSGLAAGDLEDSGIEGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	0	1
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024717 [exp]	1.0	0.9474
AT2G46640			unknown protein		Lus10005993 [exp]	2.4	0.9088
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10025196 [exp]	3.0	0.8332
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	3.5	0.8942
					Lus10015620 [exp]	3.5	0.8868
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10028822 [exp]	4.9	0.8613
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006307 [exp]	5.0	0.8666
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10035706 [exp]	5.7	0.8091
AT1G25480			Aluminium activated malate tra...		Lus10035037 [exp]	6.3	0.8554
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020706 [exp]	7.2	0.7488

Compare expression of checked genes

Lus10024716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.