Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41610 458 / 2e-153 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 446 / 2e-148 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G17630 444 / 3e-148 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT1G64170 409 / 3e-134 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT3G53720 350 / 1e-111 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT2G13620 284 / 9e-87 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT5G58460 137 / 4e-34 ATCHX25 cation/H+ exchanger 25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, cation/H+ exchanger 25 (.1) AT1G06970 134 / 3e-33 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT1G05580 130 / 8e-32 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT5G37060 127 / 6e-31 ATCHX24 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032332 [exp] 618 / 0 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017541 [exp] 548 / 0 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10017540 [exp] 370 / 7e-119 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10025322 [exp] 334 / 1e-105 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10028747 [exp] 300 / 1e-99 AT4G23700 327 / 2e-107 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10030013 [exp] 317 / 1e-98 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 314 / 3e-97 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10025325 [exp] 159 / 2e-45 AT3G53720 324 / 5e-106 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10040881 [exp] 154 / 1e-39 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G134900 [exp] 504 / 2e-171 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 468 / 2e-157 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 467 / 4e-157 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 447 / 5e-149 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 446 / 2e-148 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.006G054700 [exp] 358 / 9e-115 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.007G105200 [exp] 315 / 4e-98 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 170 / 3e-45 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 154 / 9e-40 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.019G123700 [exp] 150 / 2e-38 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10024717 pacid=23161565 polypeptide=Lus10024717 locus=Lus10024717.g ID=Lus10024717.BGIv1.0 annot-version=v1.0 ATGGCTCCAGGGAATGCAACATGCTATCCGCCGATGAAAGCCACCTCCAATGGCGTCTTCCAAGGAGACACCCCGCTCGATTACGCATTGCCGCTCGCCA TTCTCCAGATCTGCCTCGTCGTAGCTCTCACTCGCATCCTCGCTTTCCTCCTCCGCCCCTTGCGCCAGCCTCGTGTCATCGCGGAGATCGTCGGAGGGAT ACTGCTAGGTCCATCAGCTTTGGGGAGAAACCAAAACTACCTCAACACTATCTTCCCACATAAGTCTCTCACAGTTCTGGACACACTAGCCAATCTGGGA CTGCTTTTCTTTCTGTTCCTAGTCGGGCTAGAACTCGACCCGAAATCCCTCAAAAGGACAGGAAAAAAGGCCTTCACCATCGCCATTGCAGGGATCAGCC TGCCATTGATAATGGGGATCGGGACATCAGTCGTCCTCCGCGGAACCATTTCGAAAGGAGTCAATGGTCCGCCATTCTTAGTCTTCATGGGAGTGGCACT CTCCATCACCGCCTTCCCCGTGTTGGCTCGAATCCTAGCAGAGCTCAAGCTATTAACGACAGACGTTGGCAGGATGGCTATGTCAGCAGCTGCGGTTAAC GACGTCGCAGCCTGGATCCTCCTCGCACTTGCGATTGCCTTATCAGGAGATGGATCTCCTCTAGTGTCCCTATGGGTGCTCTTAGCCGGAGCTGGATTCG TCGCTGCTTGTGTATTAGTACTGCCTCAAGTGTTTGGATGGATGGCGCAGCGTTGCCCTGACGGAGAACCTGTTGACGAAATCTATGTCTGTGTCACGCT GTGTGTTGTCCTGGCAGCTGGATTCATCACTGACATGATCGGGATCCATGCCCTTTTCGGAGCGTTCATCGTTGGGATCCTCGTTCCGAAAGAAGGAGCG TTCGCTGGTGCGCTAGTGGAGAAGGTTGAAGATCTTGTTTCTGGTCTTTTCCTGCCGCTGTACTTCGTATCGAGCGGATTGAAGACAAACGTTGCCACTA TCCAAGGTGCACAATCATGGGGGCTCTTAGTTCTGGTCATAACCACAGCTTGTTTTGGCAAGATCTTTGGTACAGTCGTCGTTTCCCTCGGGGGTGTACA AGCCAGCGAAGCGAGCTTCGAAAACAGAGTACAAGCACAGAACGATCGAGAGGAAAGATCCGAACGATCAATTCAGACTGTTGGCATGCTTCCACTCTTC AAGAAACATACCTGGATTGATCAACCTCATCGAAGCATCTCGAGGAACGGAGAAGCGTCAAGGCGTGTGCGTCTACGCTCTCCACCTTTTAGAGCTTTCC GAACGGCCATCGGCGATTCTCATGGTTCACAAGGCCAGGAAGAACGGACTCCCGTTCTGGAACAAGATCCAGCAATCCGGTTCGAACCAGGTCGTCGTCG CGGCGTTCGAGGCGTTCCGCCAGCTGAGCCGCGTCGTGATCCGTCCGATGACAGCGATCTCCCCCGTCCAGACGATGCAGACCGACATATGCGAGAGCGC GGAGCGGAAGCGAGCGGCGATGATCATCCTCCCGTTCCACAAACATCAGCGAATTGA
AA sequence Show only first row Show all	>Lus10024717 pacid=23161565 polypeptide=Lus10024717 locus=Lus10024717.g ID=Lus10024717.BGIv1.0 annot-version=v1.0 MAPGNATCYPPMKATSNGVFQGDTPLDYALPLAILQICLVVALTRILAFLLRPLRQPRVIAEIVGGILLGPSALGRNQNYLNTIFPHKSLTVLDTLANLG LLFFLFLVGLELDPKSLKRTGKKAFTIAIAGISLPLIMGIGTSVVLRGTISKGVNGPPFLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVN DVAAWILLALAIALSGDGSPLVSLWVLLAGAGFVAACVLVLPQVFGWMAQRCPDGEPVDEIYVCVTLCVVLAAGFITDMIGIHALFGAFIVGILVPKEGA FAGALVEKVEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVITTACFGKIFGTVVVSLGGVQASEASFENRVQAQNDREERSERSIQTVGMLPLF KKHTWIDQPHRSISRNGEASRRVRLRSPPFRAFRTAIGDSHGSQGQEERTPVLEQDPAIRFEPGRRRGVRGVPPAEPRRDPSDDSDLPRPDDADRHMRER GAEASGDDHPPVPQTSAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024717 [exp]	0	1
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	1.0	0.9474
					Lus10015620 [exp]	2.8	0.8835
AT2G43990			unknown protein		Lus10008165 [exp]	3.0	0.8767
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10035706 [exp]	4.5	0.8108
AT1G25480			Aluminium activated malate tra...		Lus10035037 [exp]	4.9	0.8546
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10001594 [exp]	6.0	0.8387
					Lus10021281 [exp]	6.6	0.8088
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10002953 [exp]	7.3	0.8507
AT2G48020			Major facilitator superfamily ...		Lus10008183 [exp]	8.9	0.8315
AT2G46640			unknown protein		Lus10005993 [exp]	10.0	0.8525

Compare expression of checked genes

Lus10024717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.