Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07830 194 / 7e-65 ribosomal protein L29 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032334 [exp] 236 / 6e-81 AT1G07830 204 / 3e-68 ribosomal protein L29 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111100 [exp] 213 / 2e-72 AT1G07830 216 / 2e-73 ribosomal protein L29 family protein (.1) Potri.002G185800 [exp] 194 / 6e-65 AT1G07830 203 / 3e-68 ribosomal protein L29 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0346 [flax] [poplar] Ribo_L29 PF06984 [flax] [poplar] MRP-L47 Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Representative CDS sequence Show only first row Show all	>Lus10024720 pacid=23161522 polypeptide=Lus10024720 locus=Lus10024720.g ID=Lus10024720.BGIv1.0 annot-version=v1.0 ATGTTTATGATGAGATTTTTTGGGAGAAGCCTCCTTGCTTCTGCGAGATCTGAATCATCCACAGCAACAGCTGCTACATCAGCTAGTCTTGGACATAACC CTCTTGAGCAGTTCTTTGAGATAGACAGGAGAGAAGATGATGAGAAGCCTGTAGTGTATGGTCGGAGCTGGAAAGCCTCTGAATTGCGGTTGAAATCTTG GGATGATCTACAGAAGCTGTGGTACGTCCTTATGAAGGAGAAGAACATGCTTATGACTCAACGCCAGATGCTTCATTCCCAGAACCTGAGATTTCCAAAT CCAGAGCGCATGCCGAAAGTTAGGAAGTCGATGTGCCGCATCAAGCAAGTGCTCACTGAGAGAGCAATCGAAGATCCGGATCCAAGGAGGTCTGCCGAGA TGAAGAGGATGGTAAATGCATTGTAA
AA sequence Show only first row Show all	>Lus10024720 pacid=23161522 polypeptide=Lus10024720 locus=Lus10024720.g ID=Lus10024720.BGIv1.0 annot-version=v1.0 MFMMRFFGRSLLASARSESSTATAATSASLGHNPLEQFFEIDRREDDEKPVVYGRSWKASELRLKSWDDLQKLWYVLMKEKNMLMTQRQMLHSQNLRFPN PERMPKVRKSMCRIKQVLTERAIEDPDPRRSAEMKRMVNAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07830			ribosomal protein L29 family p...		Lus10024720 [exp]	0	1
					Lus10032698 [exp]	4.9	0.8566
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	5.6	0.8808
AT2G44860			Ribosomal protein L24e family ...		Lus10020552 [exp]	7.1	0.8646
AT2G34050			unknown protein		Lus10013954 [exp]	9.2	0.8403
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	15.1	0.8543
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	16.0	0.8593
AT5G64816			unknown protein		Lus10025266 [exp]	16.0	0.7881
AT5G18540			unknown protein		Lus10002878 [exp]	17.5	0.8475
AT2G45520			unknown protein		Lus10015859 [exp]	19.0	0.8529
AT4G17510		UCH3	ubiquitin C-terminal hydrolase...		Lus10026940 [exp]	20.6	0.8530

Compare expression of checked genes

Lus10024720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.