Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23110 344 / 4e-105 EMB2800, AtRLP37 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) AT3G05370 326 / 3e-98 AtRLP31 receptor like protein 31 (.1) AT1G71400 319 / 9e-96 AtRLP12 receptor like protein 12 (.1) AT5G25910 315 / 7e-95 AtRLP52 receptor like protein 52 (.1) AT3G28890 302 / 7e-91 AtRLP43 receptor like protein 43 (.1.2) AT3G05360 300 / 4e-89 AtRLP30 receptor like protein 30 (.1) AT3G05660 301 / 6e-89 AtRLP33 receptor like protein 33 (.1) AT3G05650 299 / 2e-88 AtRLP32 receptor like protein 32 (.1) AT4G13920 295 / 2e-86 AtRLP50 receptor like protein 50 (.1) AT2G33020 290 / 3e-85 AtRLP24 receptor like protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032335 [exp] 1381 / 0 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014910 [exp] 844 / 0 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10011064 [exp] 502 / 3e-163 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10011039 [exp] 465 / 7e-144 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10027580 [exp] 432 / 2e-142 AT5G62230 194 / 4e-53 ERECTA-like 1 (.1.2) Lus10014905 [exp] 380 / 3e-123 AT1G47890 240 / 4e-70 receptor like protein 7 (.1) Lus10003389 [exp] 319 / 3e-94 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 318 / 6e-94 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10002214 [exp] 298 / 4e-91 AT3G05660 293 / 2e-89 receptor like protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G027400 [exp] 400 / 2e-125 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G008911 [exp] 395 / 1e-123 AT3G05650 303 / 5e-89 receptor like protein 32 (.1) Potri.012G026900 [exp] 393 / 2e-122 AT3G25010 315 / 2e-93 receptor like protein 41 (.1) Potri.011G055000 [exp] 390 / 7e-122 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.012G010445 [exp] 385 / 4e-119 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.012G008300 [exp] 378 / 4e-118 AT2G33060 332 / 5e-101 receptor like protein 27 (.1) Potri.012G030125 [exp] 377 / 8e-118 AT2G33060 330 / 2e-100 receptor like protein 27 (.1) Potri.012G025300 [exp] 375 / 6e-117 AT2G33060 357 / 9e-111 receptor like protein 27 (.1) Potri.012G026600 [exp] 373 / 5e-116 AT2G33060 345 / 4e-106 receptor like protein 27 (.1) Potri.012G009400 [exp] 371 / 2e-115 AT2G33060 414 / 3e-132 receptor like protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024721 pacid=23161640 polypeptide=Lus10024721 locus=Lus10024721.g ID=Lus10024721.BGIv1.0 annot-version=v1.0 ATGGCAAGCCCTGCAATTGTTGCTGTTACAGTAGTGGTAGTAACTCTCTGCCATATCTGCTCCACTGTTTCTCCCACCCGAATCCGTTGCGCAGACTCTG AAAGATCACTTCTCCTACGACTCAAACACGAAATCTCCATCAATACTAGCCTATCATCATATACCCTACCACCTGATCCAACACCAAAATTTTGGTCATG GAACGACCACAAAGATTGCTGCTTGTGGGATGGAGTCACTTGTGATTCGGATTCGGGTCATGTCATCGGTCTCGACCTCAGCAGCAGCTCGATTCTAGGC GGAATCAACGACTCGAGCAGCATTTTTCGACTTCGTCATCTCCAAAGTCTTAACCTTGCTCATAACAAGTTGTTCGACTCGGGTTCTGCTTTCCCTTATG GTTTCAGTAACCTGTCCAGTTTGACTCATCTCAACCTGTCACGTGCGAGGTTTCGCGGGCCAATCACTAAGTCTGTATTTTCAACCCTTGGAAGAATGTT GGTCTCCCTCGATCTTTCTTATAACACCGGTTCGAGCCTAAATATCGAGAAGCTAGTTACCAACATGACCAGACTCGAAGTTCTTCGTCTCGATACATTA GGTCTCTCCCCCGGCTTCAGCAACAAGTCATTGTCATTGTTACCGGAAAAGCTCCGGGAGCTGAGTTTGAGTAATTGCGACCTCACCGGAGAAGAAGTAC AGTTTCCATCCCTTCTACGTCTGACCCTCACTCATTTGGTGCTATCCGACAATTACAACCTTGCATGGAATGTCACTGGCTATTCGTTCGTCCAGTTTCC TCATCTCGTTGATCTGCAGCTCTCCGATTGCGGGTTGTATGGGACAATGCCGAGCAGTGTTTTCTCGATTCCCAATCTCCAATGCCTTGATGTTTCCAGC AACTCTCTTCTTGCTGGTACTCTGCCCGATTTTTCTACTGGCGGTAGCCCACTACTACAAGTCATCCGGCTTTCGAATACAAAGTTTTCTGGGAAACTAC CTGATACGATCAACAATTTAAAGTCACTCCATGTTTTGGAACTCAATGCATGCAACTTTAATGGGTTCATCCCATCTTCGATCGACAATCTCACTGAATT ACACCGTCTCGACTTTTACGGAAATAACTTCAGAGGACCAATCCCATCATTACATGCTTCGTCCAACAAGTTCGAGCTACTCGACTTTTCTTCCAATAAT TTCAGTGGTACCATCCCCGTATCTTACGGTCACTTTACCAACCTCGTGATGTTGAGGTTGAGGAATAATGAGATACAAGGACAGATTCCTCGTTTTCTAT TCACTAGTAATGGAAATATCTCGAGTGAGTTTCAGGGGTTGGGTTACCTCGATCTTTCGAGTAACGACATAAGAGGAGACATACCTTCATCCATTTGTGA TTTTGAATTTCTAGAAGTCCTGGATCTCTCCAATAATCATCTTAATGGTTCCATCCCGTCATGTTTGGCTTCACTACAGTTTCTCGGCGTGCTAAACTTG AAAAACAACAAATTAAGCGGGACACTCCCGAAAGGTTTTGCAGAGGGATGCAGTTTGAAAACCCTTGACGTGAATCAGAACAACCTCCGTGGCCAAATTC CAGAATCTCTAAGCTTGTGTAGCGCTTTGCAGGTTCTAGATGTGGGAAAGAACTACTTGACCGGAAAGTTTCCGATTTGGTCGGAGGGTTTGCAGTACCT GAGAGTTCTGGTCTTGCACTCCAACCGGTTTAGCGGCTCTATTGATTCTGAAACCCCGAATAATGCATTTCCTGCACTACAAATATTTGATGTTTCTTCT AACAAATTTGTTGGTGAGCTGCCTTCAGGATGGTTTGGAAGTTGGAAGGGAATGATGAAGCCGGCTACTGATGAACTTATCGGCTTTGGTTTCATAACGT CACTTTCTCGGTTCGTTAACGCTCCTGGTTATGTATATCTGTACACTTATTCGGTCAGGGTGAATGTTAAAGGAATCGAAAGGGAGTACGACAAGATTCT CATCATCGTCCTCTTACTTGATGTGTCCAACAACAACTTTGCTGGCGAAATCCCCGAATCAATAGCTCATCTCGAATATCTACAGCTGCTCAACCTCTCC AACAACCATTTTACAGGTCACATCCCAACATCATTCGGAGAACTAAGTCAGCTTGAATCACTAGACGTTTCATCAAACGCCCTCTCCGGTAACATCCCCT CGCACCTCACCAAGCTCACATTCCTATCGGTTTTCAACACATCGCATAATTCTCTAAGCGGGGTGATTCCCCATGGAAGACAATTCGATACTTTCGATGC AAATTCTTATCTAGGAAATGCTGAACTGTGTGGCATCCCATTGAGCAAACCTTGCTTTCTACTGAAATCATCAACTTCGGGCACTAACCCAACAATCGAA GGAGGGCAAAGTGTGATTGATTGGGATTTTTTTCGAGATGGGATCGCAGGTGGATGGGTATCGGGTGTTATTCTCGGAATTCTAGTAGCGAAAATCATGT TTAGGAATCCTTTTGCCTTGCCTAAAACAAGAAGGGTTCGTAGTTTGGTAGTTCGTCCTTCAAGACGAAACTAA
AA sequence Show only first row Show all	>Lus10024721 pacid=23161640 polypeptide=Lus10024721 locus=Lus10024721.g ID=Lus10024721.BGIv1.0 annot-version=v1.0 MASPAIVAVTVVVVTLCHICSTVSPTRIRCADSERSLLLRLKHEISINTSLSSYTLPPDPTPKFWSWNDHKDCCLWDGVTCDSDSGHVIGLDLSSSSILG GINDSSSIFRLRHLQSLNLAHNKLFDSGSAFPYGFSNLSSLTHLNLSRARFRGPITKSVFSTLGRMLVSLDLSYNTGSSLNIEKLVTNMTRLEVLRLDTL GLSPGFSNKSLSLLPEKLRELSLSNCDLTGEEVQFPSLLRLTLTHLVLSDNYNLAWNVTGYSFVQFPHLVDLQLSDCGLYGTMPSSVFSIPNLQCLDVSS NSLLAGTLPDFSTGGSPLLQVIRLSNTKFSGKLPDTINNLKSLHVLELNACNFNGFIPSSIDNLTELHRLDFYGNNFRGPIPSLHASSNKFELLDFSSNN FSGTIPVSYGHFTNLVMLRLRNNEIQGQIPRFLFTSNGNISSEFQGLGYLDLSSNDIRGDIPSSICDFEFLEVLDLSNNHLNGSIPSCLASLQFLGVLNL KNNKLSGTLPKGFAEGCSLKTLDVNQNNLRGQIPESLSLCSALQVLDVGKNYLTGKFPIWSEGLQYLRVLVLHSNRFSGSIDSETPNNAFPALQIFDVSS NKFVGELPSGWFGSWKGMMKPATDELIGFGFITSLSRFVNAPGYVYLYTYSVRVNVKGIEREYDKILIIVLLLDVSNNNFAGEIPESIAHLEYLQLLNLS NNHFTGHIPTSFGELSQLESLDVSSNALSGNIPSHLTKLTFLSVFNTSHNSLSGVIPHGRQFDTFDANSYLGNAELCGIPLSKPCFLLKSSTSGTNPTIE GGQSVIDWDFFRDGIAGGWVSGVILGILVAKIMFRNPFALPKTRRVRSLVVRPSRRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10024721 [exp]	0	1
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10036402 [exp]	1.0	0.9527
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10003560 [exp]	1.4	0.9340
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10032335 [exp]	3.5	0.8914
					Lus10036528 [exp]	4.0	0.8665
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10028530 [exp]	5.7	0.8874
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	6.2	0.8959
AT1G45688			unknown protein		Lus10025793 [exp]	6.5	0.8898
AT3G55760			unknown protein		Lus10021897 [exp]	6.7	0.8920
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	11.7	0.8930
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003461 [exp]	12.4	0.8871

Compare expression of checked genes

Lus10024721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.