Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61600 765 / 0 ATPOB1 POZ/BTB containin G-protein 1 (.1.2) AT2G46260 749 / 0 BTB/POZ/Kelch-associated protein (.1) AT4G01160 510 / 7e-173 BTB/POZ/Kelch-associated protein (.1) AT2G30600 46 / 0.0001 BTB/POZ domain-containing protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032340 [exp] 1011 / 0 AT3G61600 827 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10017545 [exp] 895 / 0 AT3G61600 820 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10028744 [exp] 808 / 0 AT3G61600 744 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10032337 [exp] 573 / 0 AT3G42170 839 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166700 [exp] 791 / 0 AT3G61600 931 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.014G093700 [exp] 785 / 0 AT3G61600 945 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.003G135300 [exp] 749 / 0 AT3G61600 733 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.001G096100 [exp] 734 / 0 AT3G61600 655 / 0.0 POZ/BTB containin G-protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF07707 [flax] [poplar] BACK BTB And C-terminal Kelch CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10024723 pacid=23161566 polypeptide=Lus10024723 locus=Lus10024723.g ID=Lus10024723.BGIv1.0 annot-version=v1.0 ATGGCAACTCCTGAAGAGAATGCTCAACTGAAGGACCATCCAACGCCTGCTACTGAGGAAACCAGCCCGCCAGCCGCTAAAGAGGAAAGTCAGAATATAG CAGCGGCTGAAGAGAAAAATCAGTTGTTGCCGTCACCAGATGTGACAATGGTACCTCGAGAAGAGAGTGACCAAAAGTTGGCACCCCAAGAAGAGAAGAA TGAAGAGGTGGTCTCCAAAGAAGATAACAAAAAGATGGAATCAACAGAAGAAAGAAATAAAGTGTCATCCAAAGAAGTTAACAACGAGGATGTGCCATCA CAAGACGATATTGATAAGATGGAGACGCAAGAAGAGAGCAATCAAGTGGTAGCTGAAAAAGATGACAATCAGAGGGTGGTGTCTGGAAAAGGTAGTAATC CTACATCTGTATCTCAAGAACATGATAATCAGACCCTACCCGCACCAGAGGAGAAAGATCAGGGATCGATTCCAAACCAAGAGAACAATGAGGTGTTGAC ATCACAAGAAGAGAACAGTCCAGTGTTGGTGTCACAAGAAGACGGTAGTCAGAAGGTGTTGCAGGTGAACAATCAGACATCAGGACCACAGGAAGATAAC ATTGAGATGACACAGGAAGATGGCAATGAGATGGTGGTGTCGAAGGAGGAGGATACTGTGATGGAAGTTCCCGAGCAGGACAGTCAAATTATGGTGCCTC AGGAGAGCAGCCAGGTGGTGGATCCTCAGGAGGATAGCAGCCAAGTGAATGTGCATCAGGAGGATACCAGTCAGGTGGCGGTGCCTCAGGGGGATAGTAC TCAGGTGGCCTTGCCTCAGGAGATTAACAGTAAGGTGGCAGAAGCTGAAGAAGAGAGCAGTCAGATGGTGGGGCTTGAGGAGGGGGAAAATCAGATGACG ATTCCTGAGGAACTAAACAGTCAGATTGAGGTGCCTCAGGAGACCAGTCAGCCGGATGTGTCTCAGGATAACACTCATTTGGTGGTTCCCAAGCAAGAGA AGGGTCAGATGTTGGTGGCTAAGGCAAGCGATCAGATGGAGAATCCTGAGGAGGAGAATAACCAGATGACAATGCCTCTGGAGAACAGTCAGTCAGAGGT AGTGCCCCGGGAGGAGAACTGTCAGTTTGCAGTGTCCCATGAGGAGAGCAGTCAGATGTATGTTACGCTAATTCCGGTGTGGGTTGATTTGATGGCAGTA GCGGAAGTCATTGGGCAAAGCGCGGAGCAGGTGCTGAATTTGAATGTCCCTGATGCAGAGGAAACTTTGCCTTATGATAACCAAGATGAAGAAGTTGTTG CCATGATCGAGGAATCTGCTGCGGAGGGTGGATTGAATTTGAATGAACAAGGTGATGATGCCCCTAGTGGTAGTGAATCTGGATGGAGCATGGACTGTTC GACTGTTTTAAGAGTTAACACGATACATATAAGCTCACCGATATTAGCAGCGAAGAGTCCATTCTTTTACAAGTTGTTTTCTAACGGGATGAGGGAATCA GATCAACGACATGTAACCCTCCGGATTCACGAGTCTGAAGAAGCAGCCTTAATGGAACTCCTCAATTTTATGTATAGCAATACTTTGTCGACAACAACTC CTACTGCTTTGTTAGATGTATTGATGGCTGCCGACAAGTTTGAAGTTGTGTCTTGTATGAGATACAGCAGTAGGTTGCTTCGAAACTTGCCTATGACAAG TGAATCAGCTTTGCTCTACTTGGACCTTCCTTCTACCGTCCTGATGGCTGATGCGGTTCAGCCACTCACTGATGCCGCGAAGCAATTTTTGGCTGGTCGA TACAAGGATATTTCCAAGTTCCAGGAAGAGGTTCTTAACTTGCCGTTGGCTGGTATTGAAGCAGTAATATCCAGTGACGATCTCCAGGTGGCTTCAAAAG ATGCTGTTTATGTTTTTGTACTGAAGTGGCCTCGCATTCACTACCCAAGATTAGATGAACGACGAGAGGTGCTTGGCACGCGACTTGTGCGATTAATTCG CTTCCCGTTCATGACTTGCCGAAAACTGAGGAAGGTCTTAACATGTAACGACTTTGATCATGACGTCGCATCAAAAGTTGTTCTGGATGCTCTCTTTTTC AAGGGCGAGATACCATACAGGCAGCGCGCTCTTGCGGCAGAGGAAGCCAATTCCCCACACCGTCGCCTTGTGGAAAGATCGTACAAGTACCGGCCGGTTA AGGTGTTGGAGTTTGAGCTTCCACGTCAGCAATGCGTGGTGTACCTCGACCTAAAACGCGAGGAGTGTACGCATCTTTTCCCATCTGGCCGAGTTTATTC GCAAGCGTTTCACCTCGGTGGACAAGGGTTCTTCTTGTCTGCCCACTGCAACATGGATCAACAAAGCTCTTTCCACTGTTTCGGACTATTTCTAGGGATG CAAGAGAAAGGATCAGTGAGCTTTGGTGTCGATTACGAGTTTGCGGCGAGGTCAAAGCCGTCAGAGGAATTTGTGAGCAAGTATAAAGGGAACTACACGT TTACAGGTGGGAAGGCTGTTGGATATAGGAACTTGTTCGGAGTACCGTGGACGGCGTTCATGGCTGAAGATAGCCCTTACTTCATCAACGGCATCCTACA TCTAAGAGCGGAGCTGACGATAACTCGATAA
AA sequence Show only first row Show all	>Lus10024723 pacid=23161566 polypeptide=Lus10024723 locus=Lus10024723.g ID=Lus10024723.BGIv1.0 annot-version=v1.0 MATPEENAQLKDHPTPATEETSPPAAKEESQNIAAAEEKNQLLPSPDVTMVPREESDQKLAPQEEKNEEVVSKEDNKKMESTEERNKVSSKEVNNEDVPS QDDIDKMETQEESNQVVAEKDDNQRVVSGKGSNPTSVSQEHDNQTLPAPEEKDQGSIPNQENNEVLTSQEENSPVLVSQEDGSQKVLQVNNQTSGPQEDN IEMTQEDGNEMVVSKEEDTVMEVPEQDSQIMVPQESSQVVDPQEDSSQVNVHQEDTSQVAVPQGDSTQVALPQEINSKVAEAEEESSQMVGLEEGENQMT IPEELNSQIEVPQETSQPDVSQDNTHLVVPKQEKGQMLVAKASDQMENPEEENNQMTMPLENSQSEVVPREENCQFAVSHEESSQMYVTLIPVWVDLMAV AEVIGQSAEQVLNLNVPDAEETLPYDNQDEEVVAMIEESAAEGGLNLNEQGDDAPSGSESGWSMDCSTVLRVNTIHISSPILAAKSPFFYKLFSNGMRES DQRHVTLRIHESEEAALMELLNFMYSNTLSTTTPTALLDVLMAADKFEVVSCMRYSSRLLRNLPMTSESALLYLDLPSTVLMADAVQPLTDAAKQFLAGR YKDISKFQEEVLNLPLAGIEAVISSDDLQVASKDAVYVFVLKWPRIHYPRLDERREVLGTRLVRLIRFPFMTCRKLRKVLTCNDFDHDVASKVVLDALFF KGEIPYRQRALAAEEANSPHRRLVERSYKYRPVKVLEFELPRQQCVVYLDLKREECTHLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGM QEKGSVSFGVDYEFAARSKPSEEFVSKYKGNYTFTGGKAVGYRNLFGVPWTAFMAEDSPYFINGILHLRAELTITR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	0	1
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10009974 [exp]	3.0	0.7509
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	4.5	0.7407
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	5.7	0.7261
AT1G26580			unknown protein		Lus10037097 [exp]	6.0	0.7334
AT4G24200			Transcription elongation facto...		Lus10009128 [exp]	10.3	0.7719
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032139 [exp]	14.9	0.7908
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	18.4	0.6994
AT1G26580			unknown protein		Lus10036888 [exp]	21.0	0.7136
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10025331 [exp]	26.4	0.7474
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10025071 [exp]	26.5	0.6780

Compare expression of checked genes

Lus10024723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.