Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80150 503 / 7e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G36680 191 / 8e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G55890 185 / 2e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13160 181 / 3e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G61870 177 / 2e-51 PPR336 pentatricopeptide repeat 336 (.1) AT2G18520 170 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13150 165 / 8e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11630 158 / 2e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16420 110 / 3e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12300 107 / 6e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032338 [exp] 783 / 0 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028054 [exp] 654 / 0 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019119 [exp] 574 / 0 AT1G80150 450 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020073 [exp] 182 / 4e-53 AT1G55890 313 / 6e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020055 [exp] 171 / 4e-49 AT1G61870 453 / 8e-159 pentatricopeptide repeat 336 (.1) Lus10024025 [exp] 157 / 6e-44 AT4G36680 475 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007619 [exp] 157 / 8e-44 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018394 [exp] 154 / 6e-43 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007620 [exp] 153 / 2e-42 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G062700 [exp] 566 / 0 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 553 / 0 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G029900 [exp] 196 / 9e-59 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032500 [exp] 172 / 1e-49 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G125400 [exp] 171 / 3e-49 AT4G36680 478 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G028400 [exp] 165 / 5e-47 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 164 / 2e-46 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032400 [exp] 158 / 2e-44 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G018000 [exp] 144 / 8e-39 AT1G61870 421 / 4e-146 pentatricopeptide repeat 336 (.1) Potri.011G001100 [exp] 139 / 3e-37 AT1G61870 419 / 1e-145 pentatricopeptide repeat 336 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024724 pacid=23161660 polypeptide=Lus10024724 locus=Lus10024724.g ID=Lus10024724.BGIv1.0 annot-version=v1.0 ATGCTCACACTGAGGTCTGTTCGCACATTCTTCCGTTACTCTACTGCTGTTGCATTCACTGATACCTACAGTACTGTATCTAACGCCATCATGAAAATAA ATCTAATTGAAGAACCTGCTCTCGTCAAGCTTAAATGTGAGAGAGATCCTGAAAAGCTATATAATCTTTTCAAGGCCAATGCTAAGAATAGGCTTGTCAT TGAGAACCGCTTTGCATTTGAAGACACAATTTCCCGCTTAGCTGGTGCAAAACGGTTTGATTACATTGAGGATTTGCTTGAGCAACAAAAGTCTCTTCCA CAAGGCAGACGTGAAGGGTTTATTGTGAGGATTATTATGTTGTATGGAAAGGCTGGGATGGCTAAGCATGCCCTCAATACCTTCTATGATATGCATCAGT CAAAAAGAACAGCTAAGTCTTTTAATGCTGCACTTACGGTATTGACAAGAACACGCGACATGGCAGTGATTGATGCATTTCTGAAAGAGGTTCCTAATAA GTATGAAATAGAATTAGATTTATACTCTTTGAACATTGTCGCTAAGGCCTTCTGTGAGATGGAGTATTTGGATAAGGCATTTTTGTTCATGGTAGGGGTG GAAAAGTTGGGGATAAGGCCAGATGTGATAACATACACTACACTTCTTGCAGCTTTATACAAAGACAATAGGTTCGAGATTGCCAATGGTTTGTGGAATC TAATGGTACTTAAGGGCTGCTTCCCAAATGTTGCAACTTTCAATGTCAGAATTCAGTATTTGGTGAATAGAAGACAAGCATGGAAAGCAAATGATGTGAT GCTTCTGATGCAGAAACTTGGTATGTTACCAGATGAGATCACTTATAACTTAGTTATCAAAGGTTTCTTTCAGGCTGGACACCTTGAGATGGCGAAAAGG GTATATTCTGCGTTGCCAGGAAGACGATTTAAGCCCAATGTTAAGATATACCAGACGATGGTTCATTATTTGTGTGAGGGTGGGGAGCTTGACATGGCTT ATAATATGGGTACAAAGTGCATGAAAAAGAATTGGTTCTTGAGTGTAGACTCCATTTCTGCACTTCTTGAGGCCTTAACGAAGAATGGGAAGTTGGACAA GGCTAGGATTATCATTTCATTAGCTAGGAGGAAGGTGCCTCCTTTTTCTTCGAACCAATTAAGCACTTTTGAGTCAATACTAAACAGTAGTTGA
AA sequence Show only first row Show all	>Lus10024724 pacid=23161660 polypeptide=Lus10024724 locus=Lus10024724.g ID=Lus10024724.BGIv1.0 annot-version=v1.0 MLTLRSVRTFFRYSTAVAFTDTYSTVSNAIMKINLIEEPALVKLKCERDPEKLYNLFKANAKNRLVIENRFAFEDTISRLAGAKRFDYIEDLLEQQKSLP QGRREGFIVRIIMLYGKAGMAKHALNTFYDMHQSKRTAKSFNAALTVLTRTRDMAVIDAFLKEVPNKYEIELDLYSLNIVAKAFCEMEYLDKAFLFMVGV EKLGIRPDVITYTTLLAALYKDNRFEIANGLWNLMVLKGCFPNVATFNVRIQYLVNRRQAWKANDVMLLMQKLGMLPDEITYNLVIKGFFQAGHLEMAKR VYSALPGRRFKPNVKIYQTMVHYLCEGGELDMAYNMGTKCMKKNWFLSVDSISALLEALTKNGKLDKARIIISLARRKVPPFSSNQLSTFESILNSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10024724 [exp]	0	1
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10032338 [exp]	5.7	0.8013
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	6.0	0.8168
AT1G69020			Prolyl oligopeptidase family p...		Lus10004631 [exp]	7.2	0.8062
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	11.5	0.7878
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10025377 [exp]	13.6	0.7974
					Lus10000429 [exp]	14.4	0.7304
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10032966 [exp]	16.7	0.7750
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	17.8	0.7983
AT2G01480			O-fucosyltransferase family pr...		Lus10034606 [exp]	29.5	0.7805
					Lus10012794 [exp]	34.8	0.7928

Compare expression of checked genes

Lus10024724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.