Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41670 896 / 0 6-phosphogluconate dehydrogenase family protein (.1.2) AT1G64190 889 / 0 6-phosphogluconate dehydrogenase family protein (.1) AT3G02360 757 / 0 6-phosphogluconate dehydrogenase family protein (.1.2) AT3G25530 55 / 4e-08 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT4G29120 45 / 7e-05 6-phosphogluconate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032341 [exp] 1003 / 0 AT5G41670 893 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10034102 [exp] 756 / 0 AT3G02360 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10003043 [exp] 756 / 0 AT3G02360 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10029098 [exp] 74 / 9e-16 AT3G02360 85 / 2e-20 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10012301 [exp] 52 / 5e-07 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10001349 [exp] 45 / 7e-05 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G095800 [exp] 895 / 0 AT5G41670 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.003G135600 [exp] 893 / 0 AT5G41670 889 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.008G113700 [exp] 765 / 0 AT3G02360 874 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.004G108920 [exp] 763 / 0 AT3G02360 884 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.017G106900 [exp] 759 / 0 AT3G02360 918 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.004G108880 [exp] 756 / 0 AT3G02360 868 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.014G197900 [exp] 62 / 3e-10 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.001G211500 [exp] 48 / 8e-06 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.018G088000 [exp] 43 / 0.0005 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF00393 [flax] [poplar] 6PGD 6-phosphogluconate dehydrogenase, C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10024725 pacid=23161614 polypeptide=Lus10024725 locus=Lus10024725.g ID=Lus10024725.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCCAACCTCTCCAGGATCGGTCTCGCCGGCCTAGCAGTGATGGGCCAGAACCTCGCCCTCAACATCGCCGAGAAAGGCTTCCCGATCTCAG TCTACAACCGCACAACCTCCAAGGTCGACGAGACCGTGCACCGCGCCCAATCGGAAGGCCCCTTCCCGCTCACCGGCCACCGCACACCTCGCGACTTCGT CCTCTCCCTCCAGCGTCCCAGATCCGTCATCATCCTCGTCAAGGCCGGGACCCCCGTTGACCAGACCATCGCCGCCTTATCCGAGCACATGGAATCCGGC GACTGCATCATCGACGGCGGCAACGAGTGGTACGAGAACACCGAGCGCCGTATCCAAGAGGTTAGCCAGCGCGGTCTCTTGTATCTAGGCATGGGCGTCT CCGGCGGAGAGGAAGGTGCTCGTAACGGCCCTTCCTTAATGCCCGGCGGATCTTTCGAAGCTTATAATAACATTAAGGATATACTTGAGAAAGTAGCTGC TCAGGTTGAGGACGGTCCCTGTGTCACTTACATTGGGGAAGGTGGAGCTGGAAATTTCGTGAAAATGGTTCATAATGGGATTGAATATGGTGATATGCAG CTGATTAGTGAAGCATATGATGTGTTGAAGAATGTAGGTGGGTTGAGTAATGAGGAATTAGGTGAGATTTTTGGTGAGTGGAATAGAGGGGAGCTTGAGA GCTTTTTGATTGAGATAACCTCTGATATCTTTAGGGTTAAGGATGATCTTGCTGATGGTGAGTTGGTAGATAAGATTCTGGATAAGACTGGAATGAAAGG GACTGGGAAATGGACTGTACAGGAAGCTGCTGAGCTGTCTGTTGCTGCTCCCACCATTGCTGCTTCTCTTGATTGCAGGTATCTGAGTGGATTGAAGGAA GAGAGGGAGAATGCTGCCAAGGTGTTGAAGGAAGCTGGAATGGAGGATGAGATAATTGGAGGAGGAAATGGTGTGAAGATTGATGATAAGAAGAGGCTGA TTGACGACGTTAGGCAAGCGTTGTATGCTTCGAAGATTTGCAGCTATGCTCAAGGGATGAACTTGCTAAGGGCTAAGAGTAATGTGAAAGGCTGGGACTT GAACTTGGGGGAGATGGCTAGGATTTGGAAAGGTGGGTGTATTATCAGGGCTGTGTTTCTGGATAGGATCAAGAAGGCTTATCAGAGGAACCCGAATTTG CCTAGCTTGGTTGTGGATCCGGAGTTTGCGAAGGAGATGGTGCAGAGGCAGGCGGCTTGGAGGAGGGTTGTTGGATTGGCAGTCTCTGCTGGGATTAGTA CCCCCGGAATGTGTGCTAGTCTTGCTTACTTTGACACTTACAGGCGCGCCAGACTGCCTGCGAATCTCGTTCAGGCGCAGAGGGACTTGTTCGGAGCTCA CACTTACGAGAGGACCGATCGCCCGGGAGCGTTCCATACCGAGTGGACTAAGCTTGCCCGCAAGAGTGTTGGCTCTTTCAATTGA
AA sequence Show only first row Show all	>Lus10024725 pacid=23161614 polypeptide=Lus10024725 locus=Lus10024725.g ID=Lus10024725.BGIv1.0 annot-version=v1.0 MEAANLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVHRAQSEGPFPLTGHRTPRDFVLSLQRPRSVIILVKAGTPVDQTIAALSEHMESG DCIIDGGNEWYENTERRIQEVSQRGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYNNIKDILEKVAAQVEDGPCVTYIGEGGAGNFVKMVHNGIEYGDMQ LISEAYDVLKNVGGLSNEELGEIFGEWNRGELESFLIEITSDIFRVKDDLADGELVDKILDKTGMKGTGKWTVQEAAELSVAAPTIAASLDCRYLSGLKE ERENAAKVLKEAGMEDEIIGGGNGVKIDDKKRLIDDVRQALYASKICSYAQGMNLLRAKSNVKGWDLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNL PSLVVDPEFAKEMVQRQAAWRRVVGLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAFHTEWTKLARKSVGSFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	0	1
AT4G00860		AT0ZI1, ATOZI1	Arabidopsis thaliana ozone-ind...		Lus10007542 [exp]	1.0	0.9557
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10008470 [exp]	1.4	0.9551
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	2.4	0.9548
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	3.2	0.9534
AT2G25670			unknown protein		Lus10017738 [exp]	3.5	0.9544
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	4.0	0.9439
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	4.2	0.9509
AT2G30050			transducin family protein / WD...		Lus10037571 [exp]	4.7	0.9371
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10002533 [exp]	5.5	0.9333
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10039164 [exp]	6.0	0.9435

Compare expression of checked genes

Lus10024725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.