Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07700 212 / 6e-70 Thioredoxin superfamily protein (.1.2.3) AT4G26160 60 / 8e-11 ACHT1 atypical CYS HIS rich thioredoxin 1 (.1) AT3G51030 54 / 2e-09 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT4G29670 55 / 4e-09 ACHT2 atypical CYS HIS rich thioredoxin 2 (.1.2) AT1G45145 52 / 6e-09 LIV1, ATTRX5, ATH5 LOCUS OF INSENSITIVITY TO VICTORIN 1, thioredoxin H-type 5 (.1) AT5G42980 50 / 3e-08 ATTRXH3, ATTRX3, ATH3 THIOREDOXIN H3, thioredoxin H-type 3, thioredoxin 3 (.1) AT3G17880 47 / 4e-06 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT2G33270 45 / 2e-05 ACHT3 atypical CYS HIS rich thioredoxin 3 (.1) AT3G02730 43 / 4e-05 TRXF1, ATF1 thioredoxin F-type 1 (.1) AT1G08570 42 / 8e-05 ACHT4 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032343 [exp] 323 / 5e-112 AT1G07700 218 / 9e-71 Thioredoxin superfamily protein (.1.2.3) Lus10028349 [exp] 55 / 8e-10 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10007994 [exp] 57 / 2e-09 AT4G29670 268 / 6e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10040554 [exp] 57 / 2e-09 AT4G29670 265 / 7e-87 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10041799 [exp] 54 / 2e-09 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10024293 [exp] 51 / 2e-08 AT3G51030 162 / 4e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10014277 [exp] 50 / 5e-08 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10000802 [exp] 50 / 6e-08 AT3G51030 165 / 5e-54 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10031334 [exp] 48 / 2e-06 AT3G17880 456 / 3e-160 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G029200 [exp] 209 / 2e-68 AT1G07700 233 / 6e-78 Thioredoxin superfamily protein (.1.2.3) Potri.005G232700 [exp] 59 / 2e-11 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.002G030000 [exp] 59 / 2e-11 AT3G51030 160 / 3e-52 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.006G150700 [exp] 56 / 2e-09 AT4G29670 259 / 9e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.018G066500 [exp] 54 / 1e-08 AT4G29670 253 / 3e-85 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.007G018000 [exp] 52 / 1e-08 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.008G194100 [exp] 50 / 6e-08 AT1G59730 119 / 3e-35 thioredoxin H-type 7 (.1) Potri.019G054800 [exp] 45 / 1e-05 AT3G02730 204 / 1e-67 thioredoxin F-type 1 (.1) Potri.006G110100 [exp] 44 / 1e-05 AT3G08710 178 / 1e-58 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.019G031900 [exp] 42 / 0.0002 AT1G08570 325 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10024726 pacid=23161671 polypeptide=Lus10024726 locus=Lus10024726.g ID=Lus10024726.BGIv1.0 annot-version=v1.0 ATGAAAAATTTACTCCTCTTTTCCAAACCCATTCCCTATTATGGAGCCAACCTCGATCCCCAATCCTACCTCTCCTCCATTCAAATCCATTCTCCAATTC CTGCAATTAGAATTCCTCCGATCAAGCCTGTAGCTAGAATCCAAAGATGTACTACTAAACATGCAATTCAGCTTGTGTGCCGTGGAAACTCAGGGGAATT AACATCTGAAATTGAGGAGGAGGAGGAGGAGGATGAACTTTGTCCAGTGGAATGCGTGAGGGAATTCAAGACCGACGAGGAATTGGCGAAGGTGATTGAG AAATCCAAGGGAAACGGCGCGCTGGTAGTGGTTGATTTCTACCGGACTTCATGCGGGAGCTGTAAGTATATTGAGCAAGGGTTTTCTAAGCTCTGCAAGG GCTCTGGCGATGAGGGCGCTCCTGTAATCTTCTTGAAACACAATGTGATTGACGAGTACGACGAACAATCAGAGGTTGCTGACCGGCTTAGAATCAAGAC AGTGCCGTTGTTCCATTTTTACAAGGATGGAGTGTTGGTGGAAGCATTTGCTACGAGAGACAAGGACAGGATCACTGAAGCTATCCTTAAATACACTTCT CTTCCATCTCAACAAGCTTAA
AA sequence Show only first row Show all	>Lus10024726 pacid=23161671 polypeptide=Lus10024726 locus=Lus10024726.g ID=Lus10024726.BGIv1.0 annot-version=v1.0 MKNLLLFSKPIPYYGANLDPQSYLSSIQIHSPIPAIRIPPIKPVARIQRCTTKHAIQLVCRGNSGELTSEIEEEEEEDELCPVECVREFKTDEELAKVIE KSKGNGALVVVDFYRTSCGSCKYIEQGFSKLCKGSGDEGAPVIFLKHNVIDEYDEQSEVADRLRIKTVPLFHFYKDGVLVEAFATRDKDRITEAILKYTS LPSQQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07700			Thioredoxin superfamily protei...		Lus10024726 [exp]	0	1
AT1G08380		PSAO	photosystem I subunit O (.1)		Lus10005199 [exp]	1.4	0.9692
					Lus10018772 [exp]	2.0	0.9608
AT2G26500			cytochrome b6f complex subunit...		Lus10011665 [exp]	3.5	0.9568
AT3G45050			unknown protein		Lus10041331 [exp]	6.0	0.9490
AT5G37360			unknown protein		Lus10004762 [exp]	7.0	0.9398
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10040081 [exp]	8.7	0.9076
AT4G31115			Protein of unknown function (D...		Lus10026864 [exp]	9.0	0.9378
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10028261 [exp]	10.2	0.9456
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10035361 [exp]	10.6	0.9128
AT5G02160			unknown protein		Lus10024373 [exp]	10.6	0.9295

Compare expression of checked genes

Lus10024726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.