Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15550 619 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 81 / 4e-16 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G52820 81 / 6e-16 WD-40 repeat family protein / notchless protein, putative (.1) AT5G64730 76 / 6e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 72 / 5e-13 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT1G48630 67 / 9e-12 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 66 / 1e-11 RACK1C_AT receptor for activated C kinase 1C (.1) AT4G15900 66 / 2e-11 PRL1 pleiotropic regulatory locus 1 (.1) AT5G08390 66 / 4e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 63 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032344 [exp] 857 / 0 AT5G15550 639 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10037439 [exp] 808 / 0 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041271 [exp] 801 / 0 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021059 [exp] 95 / 2e-20 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 89 / 3e-18 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039597 [exp] 81 / 7e-16 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 79 / 2e-15 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10033710 [exp] 70 / 2e-12 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10012230 [exp] 68 / 4e-12 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093300 [exp] 669 / 0 AT5G15550 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 79 / 3e-15 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.009G058000 [exp] 77 / 8e-15 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.001G221000 [exp] 68 / 4e-12 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.004G150700 [exp] 69 / 6e-12 AT3G18860 1099 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.012G060800 [exp] 69 / 7e-12 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.002G212800 [exp] 66 / 1e-11 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G263400 [exp] 66 / 3e-11 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.010G012800 [exp] 66 / 3e-11 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.015G049500 [exp] 66 / 4e-11 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0072 [flax] [poplar] Ubiquitin PF08154 [flax] [poplar] NLE NLE (NUC135) domain
Representative CDS sequence Show only first row Show all	>Lus10024727 pacid=23161606 polypeptide=Lus10024727 locus=Lus10024727.g ID=Lus10024727.BGIv1.0 annot-version=v1.0 ATGACAACGATTAGGTATGGTTTCTTGGGAAGGAAGGAAGGAATGAGACGTGCCATCACTAATGGAGAGAACTTTGTCGCAGTCCATGACAGTAGGGATC CTGTGAGCCACTGTGATGACGTAGCTCCGGAGGCTGAAGCTCCTGCTAGCTACCTGCTAAGGCTCCAGCCGACCAAGGCAAAGGCATTAAGGCAGCAAGG CCTCTCCATTCCAACGGACATAGCAATGGACACTGACATGGAAGAACGGCAGATTCAAGCTCGATTTGTCACAAAACTGAAGCCCCCCTTCAAAGCTCCG CCCACCGGCATTACCATCCCTGCTACTATTACCCGTCTCGGTCTCTCCTCTATTGTCAACAGCCTCCTCCAAGCTGGTGCTCCTCAATGGGAGTCTCAAC CCTTTGACTTTCTGATTGATGGGGAGCTGGTTCGAATGTCCCTTGACCAGTTTCTCCTAGCTAAAGGCATTTCGGCTGAGAGGACATTGGAAATTGAATA TATACAGGCAGTGGTTCCGAGGAAAGAGGAAGATCCTTCATTGCATGACGATTGGGTCAGTGCAGTTGATGGTTCTTGTTCTAGGTTCATCCTGACTGGA AGCTATGACGGTTTTGGAAGGGTGTGGAAAGCTGCCGGAATATGTACTCATATACTTGAGGGTCACACTGATGCAGTTACCTCTGTCACTGTCATTAACC CTGAAGGTAATGCAACTCTTGCTACCGCGTCAAAAGATCACACTGTTAGACTGTGGAAGATGGATGCAGAAAAACCTAAGAAATCTCCTGCCAAGATTAG GCCATTCAAGATTTTGCGCGGTCACAATGCATCCGTGCAGAGTGTTGCAGCCCAAACATCTGGAAACATGATTTGTTCAGGTTCTTGGGATTCTACGATC AACTTGTGGCAGACGAATGATTCTGCTGCAGAAGATAATTCAGTCTCAATTAAGAAGAGAAAAACGAAAAATGATACTCAGGATTCTCAATTGGAGGGTG CAGCAGTCTCTACGTTGGTGGGTCATACACAACGTGTATCTGCAGTTGTATGGCCAGAAGCTGATACAATCTATTCAGCATCCTGGGATCATTCCATCAG AAGATGGGATACCGAGATGGGCAAAGACGTGATGAGCATATTCTGTGGAAAAGCCTTGAATTGCCTTGATATAGGAGGTGAAGGGTCAGCCCTTGTGGCC GCAGGAGGATCAGATCCCGTATTGAGGATATGGGATCCACGAAAGCCAGGAACTTCTGCTCCTGTGTACCAGTTTTCTTCCCATGGTTCATGGATTTCAG CATCCCAGTGGCACAAGAAATCTCCTTTCCACTTACTTTCTGCATCTTACGATGGACAAGTCATGTTGTGGGATCTAAGAACTGCGTGGCCTCTTTCTGT CATCAAGTCCCATGAAGACAAGGTGTTATGTGCTGATTGGTGGAAAGGGGAAAGCGTAGTCAGTGGCGGAGTAGACTCGAAGCTTCGAATTCATTCTGGA ATTTCTGTAGTAACTTGCAGTAAAAGGCAAGATAAGCCAGAGGTGTTAGGAGCCGGAGCAAAGCCAAAGGCATTTGATTCTTAA
AA sequence Show only first row Show all	>Lus10024727 pacid=23161606 polypeptide=Lus10024727 locus=Lus10024727.g ID=Lus10024727.BGIv1.0 annot-version=v1.0 MTTIRYGFLGRKEGMRRAITNGENFVAVHDSRDPVSHCDDVAPEAEAPASYLLRLQPTKAKALRQQGLSIPTDIAMDTDMEERQIQARFVTKLKPPFKAP PTGITIPATITRLGLSSIVNSLLQAGAPQWESQPFDFLIDGELVRMSLDQFLLAKGISAERTLEIEYIQAVVPRKEEDPSLHDDWVSAVDGSCSRFILTG SYDGFGRVWKAAGICTHILEGHTDAVTSVTVINPEGNATLATASKDHTVRLWKMDAEKPKKSPAKIRPFKILRGHNASVQSVAAQTSGNMICSGSWDSTI NLWQTNDSAAEDNSVSIKKRKTKNDTQDSQLEGAAVSTLVGHTQRVSAVVWPEADTIYSASWDHSIRRWDTEMGKDVMSIFCGKALNCLDIGGEGSALVA AGGSDPVLRIWDPRKPGTSAPVYQFSSHGSWISASQWHKKSPFHLLSASYDGQVMLWDLRTAWPLSVIKSHEDKVLCADWWKGESVVSGGVDSKLRIHSG ISVVTCSKRQDKPEVLGAGAKPKAFDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15550			Transducin/WD40 repeat-like su...		Lus10024727 [exp]	0	1
AT1G77550			tubulin-tyrosine ligases;tubul...		Lus10027620 [exp]	1.0	0.9350
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10041191 [exp]	4.0	0.8945
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10005351 [exp]	6.5	0.8990
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10010127 [exp]	9.5	0.8800
AT4G34910			P-loop containing nucleoside t...		Lus10015433 [exp]	11.1	0.8967
AT5G15610			Proteasome component (PCI) dom...		Lus10030706 [exp]	11.5	0.8928
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10020369 [exp]	11.7	0.8941
AT1G10840		TIF3H1	translation initiation factor ...		Lus10020427 [exp]	13.3	0.8819
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10010202 [exp]	16.0	0.8925
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	16.9	0.8941

Compare expression of checked genes

Lus10024727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.