Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14185 341 / 1e-113 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 333 / 1e-110 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 231 / 1e-70 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G73050 214 / 3e-64 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 199 / 2e-58 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 199 / 2e-58 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 182 / 5e-52 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 177 / 3e-50 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G59140 42 / 0.001 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026606 [exp] 466 / 7e-163 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 447 / 3e-155 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 438 / 5e-152 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 427 / 7e-147 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 421 / 1e-144 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 420 / 3e-144 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012817 [exp] 419 / 5e-144 AT1G14185 545 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 417 / 3e-143 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 406 / 1e-138 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 384 / 5e-130 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 372 / 2e-125 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 364 / 3e-122 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G009600 [exp] 200 / 8e-59 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 197 / 1e-57 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 191 / 4e-55 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 181 / 2e-51 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 171 / 8e-49 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 58 / 4e-10 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G095600 [exp] 44 / 0.0001 AT3G59140 1639 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10024728 pacid=23161667 polypeptide=Lus10024728 locus=Lus10024728.g ID=Lus10024728.BGIv1.0 annot-version=v1.0 ATGGTGTTGTTTTATTTTGTTCATTTGATAGGGAAACTGGTCGAGTACAATGAGCCGTTGGAGCTGATGAAGCGCGAGACTTCACTGTTTGCACAGCTTG TAAAAGAAGGAAGAGTCCTTGGAGGGACGACAGCCATAAATGGAGGGTTCTACAGTCGAGCCAGCGAGGAATTCGTCACGAAATCCGGTTGGGATAAACA GCTGGTGAAGGAATCTTACGAATGGGTTGAATCTACAATCATTACCAAACCTGAGCTGACAACGTGGCAAGCCGCTGTCAGGTCTGGATTCCTTGAAGCG GGAATCCTTCCTAACAACGGATTCACCTGGGAACACATCCAAGGAACGAAGATTGGTGGCTCAACGTTTGATTCACAGAACAAAAGGCATACCTCTGCTG ATCTTCTGCAGATGGGAAGACCTGAGAACATCATAGTTCTATTGAATGCTACGGTCAAGAGTGTCATTCAACAACGTCACGATACCGGAGATCAAACCTA TGAAGCTTACCTTAAGCAACCAGCGAATCGAACATGTTCGTCCGGAGAGGTGATATTATCAGCAGGAGCATTAGGCAGCCCTCAGATCCTCCTACTGAGC GGCATCGGACCGAAACCCCATCTCAACCGACTCAACATCCCACTCATCCTCGAGTCGAACCACGTGGGACTCGAAGGGCAAGATAACCCGGGAATTTCCA TCTTGGTCAGTTCGAAACCCGGACAGAAGCCCCCAGACCCACCACAAGTAGCAGGGATAACAAAAGGATTCAACTTCCAAGGGGTCATCGGACCAGTAAG CTTCAATGCTACAAGGAACAGAATATCAATCAAGCTAGCACTCCCGGAACCCAAAGGGAAGCTGGAACTGAACTCAACCGATCCCAGGACGAACCCTGAA GTTTCATACAAGTACCTGGAGAGAGAGACATGGATGGATGTGTGGAGATGGGAGAATGTCGCGAGTTACTTCCATTACCATGGTGGGTGTGTTGTTGGAT CGGTTGTTGATGATGATTATAGAGTGGTTGGTGTCGATGGTCTGAGAGTTGTGGATGGTTCGATGTTCTCTGAAGCGCCCGGGTCGAACCCGATGGCTAC AGTTCTGATGCTTTGCAGGTATCAAGGGATCAAGATTCTTGTTGAGAGGAACAAGTGTGAAAAATAA
AA sequence Show only first row Show all	>Lus10024728 pacid=23161667 polypeptide=Lus10024728 locus=Lus10024728.g ID=Lus10024728.BGIv1.0 annot-version=v1.0 MVLFYFVHLIGKLVEYNEPLELMKRETSLFAQLVKEGRVLGGTTAINGGFYSRASEEFVTKSGWDKQLVKESYEWVESTIITKPELTTWQAAVRSGFLEA GILPNNGFTWEHIQGTKIGGSTFDSQNKRHTSADLLQMGRPENIIVLLNATVKSVIQQRHDTGDQTYEAYLKQPANRTCSSGEVILSAGALGSPQILLLS GIGPKPHLNRLNIPLILESNHVGLEGQDNPGISILVSSKPGQKPPDPPQVAGITKGFNFQGVIGPVSFNATRNRISIKLALPEPKGKLELNSTDPRTNPE VSYKYLERETWMDVWRWENVASYFHYHGGCVVGSVVDDDYRVVGVDGLRVVDGSMFSEAPGSNPMATVLMLCRYQGIKILVERNKCEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	0	1
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	1.7	0.8909
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10023810 [exp]	2.8	0.8263
AT2G27550		ATC	centroradialis (.1)		Lus10015520 [exp]	4.0	0.7899
					Lus10005608 [exp]	4.2	0.8290
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000880 [exp]	5.5	0.8029
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	5.5	0.8122
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	7.9	0.8410
					Lus10040545 [exp]	9.0	0.7813
AT1G55790			Domain of unknown function (DU...		Lus10032899 [exp]	9.2	0.7515
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020250 [exp]	9.8	0.7138

Compare expression of checked genes

Lus10024728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.