Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44650 216 / 6e-69 Y3IP1, AtCEST Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008075 [exp] 364 / 5e-123 AT5G44650 209 / 2e-63 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Lus10036245 [exp] 197 / 2e-62 AT5G44650 169 / 4e-52 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Lus10038385 [exp] 191 / 1e-59 AT5G44650 163 / 2e-49 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G074200 [exp] 242 / 4e-79 AT5G44650 266 / 3e-89 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Potri.019G079401 [exp] 41 / 2e-05 AT5G44650 43 / 4e-07 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Potri.001G074300 [exp] 44 / 9e-05 AT4G20190 135 / 4e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024729 pacid=23159555 polypeptide=Lus10024729 locus=Lus10024729.g ID=Lus10024729.BGIv1.0 annot-version=v1.0 ATGACGACTACAGTGCCCATCCAACTCCCTAAATTTCCGCTTTCTTCACCATCGCCGCTTCTTTCTCCGGCAACCTATTTCGCCTACTTACGCCGGGCGC CGTCCCCGAACTCGAAATGCTGGAAAGAATCGTCCTTCAATGGTGCTTACTACAGTGGCCTGGGAGGAAGAAAGTCGGGGCTTTTGTGGGTCGGTAGAGA GGATATTGAAATGCCAGTTGAAGTAGAAGAATATGAAGACGATGATGGTGAAGAGGAAGAAGAAGAAGAAGACGTACCGCCAACTCCTCAGGACCTCGAA TACATTGGAGAAATCAAAAGGGTGTTGGAGCTGCTTAAAAAGAATAGAGACATGCTTTTCAATGAGGTTAAGCTGACGATAATGATCGAAGATCCAAGAG AAGAGGAGAGAAAGAAGCTATTTGGCATTGACGACCCTGATGCTCCTACAAGAGACGAGCTTGCTGAAGCTCTAGAATTAATTAAGGAAGGCAAGGTCCC TAAAGAGCGGCTAGCACTTAGAATGCTAGCAAACGAAATGACCAATTGGCCTAACTTAGAGGTGGAGGTGTCAAAGAAGGCAAAGCCAACAAAATCGCTA TACGCAAGAGTGACAAACACTGGTATAGATCCTAAAGAGGCTGCCAAGAGACTAAAAGTTGACTGGGATTCAGCTGCCGACTTTGAAGATACTGCGGAGG ATAGTGATGGCACAGAAGTACCTTCAGCTTTGGGTTATGGAGCTTTGTATTTGGTGACTGGTTTCCCTGTCCTCATCGTGAAAGCCAATGAGAACGAGGT AAATTCACCGGTGGTGGCCGCCTTTGTGTTCGACAAGGATCGGAAGAAAGGTTCGACGGACCGTATGGCTGTCCACCGCAAGTCTCAAGATTCGTCTGCC AGGAACGCGCGATTTCCGTCGTCGTCGGCGAGTCCTTCGTCTCCAGCTATATGCATTACACCATGA
AA sequence Show only first row Show all	>Lus10024729 pacid=23159555 polypeptide=Lus10024729 locus=Lus10024729.g ID=Lus10024729.BGIv1.0 annot-version=v1.0 MTTTVPIQLPKFPLSSPSPLLSPATYFAYLRRAPSPNSKCWKESSFNGAYYSGLGGRKSGLLWVGREDIEMPVEVEEYEDDDGEEEEEEEDVPPTPQDLE YIGEIKRVLELLKKNRDMLFNEVKLTIMIEDPREEERKKLFGIDDPDAPTRDELAEALELIKEGKVPKERLALRMLANEMTNWPNLEVEVSKKAKPTKSL YARVTNTGIDPKEAAKRLKVDWDSAADFEDTAEDSDGTEVPSALGYGALYLVTGFPVLIVKANENEVNSPVVAAFVFDKDRKKGSTDRMAVHRKSQDSSA RNARFPSSSASPSSPAICITP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	0	1
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10003690 [exp]	1.0	0.9530
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	2.0	0.8942
AT2G38780			unknown protein		Lus10019776 [exp]	2.0	0.9162
AT1G15740			Leucine-rich repeat family pro...		Lus10035912 [exp]	2.2	0.8892
AT2G24395			chaperone protein dnaJ-related...		Lus10026979 [exp]	2.4	0.8890
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10007994 [exp]	3.0	0.8945
AT3G01310			Phosphoglycerate mutase-like f...		Lus10015343 [exp]	4.2	0.8459
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10000343 [exp]	4.9	0.8253
AT5G14120			Major facilitator superfamily ...		Lus10023961 [exp]	5.2	0.8699
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	6.6	0.8661

Compare expression of checked genes

Lus10024729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.