Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20170 463 / 9e-160 Domain of unknown function (DUF23) (.1) AT5G44670 459 / 3e-158 Domain of unknown function (DUF23) (.1) AT2G33570 349 / 3e-115 Domain of unknown function (DUF23) (.1) AT5G48190 113 / 3e-30 Domain of unknown function (DUF23) (.1) AT3G60990 113 / 3e-30 Domain of unknown function (DUF23) (.1) AT3G07380 110 / 4e-29 Domain of unknown function (DUF23) (.1) AT4G37420 43 / 0.0004 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008076 [exp] 716 / 0 AT5G44670 642 / 0.0 Domain of unknown function (DUF23) (.1) Lus10038387 [exp] 622 / 0 AT5G44670 639 / 0.0 Domain of unknown function (DUF23) (.1) Lus10036247 [exp] 617 / 0 AT5G44670 649 / 0.0 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 43 / 0.0004 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G074600 [exp] 567 / 0 AT5G44670 613 / 0.0 Domain of unknown function (DUF23) (.1) Potri.003G156600 [exp] 564 / 0 AT5G44670 598 / 0.0 Domain of unknown function (DUF23) (.1) Potri.005G258900 [exp] 339 / 2e-111 AT2G33570 706 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 42 / 0.0007 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.008G192000 [exp] 42 / 0.001 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10024731 pacid=23159540 polypeptide=Lus10024731 locus=Lus10024731.g ID=Lus10024731.BGIv1.0 annot-version=v1.0 ATGGGTATTGTACTTAACTGCGCCCCTGATCTTAAGCTTATCCTCATCGCTCTCCTTATCCTCTGCCCCGTCGTCACCCTCCTCCAGTTCCTCCCTTCCC GTTTCATCATCTCCACCTCCGATCTCCGCTTCTGTATCTCCCGAATCACAACCACCACCACCACTACCACCACTGAACCTGCCGCCATATTTCCTCTCAA CTCCTCCTCCTCCTCCGCCGCTCTTACCACTTCGCATCTGCTCGTTCCGCCGCCGCCCCTCCCTTCTTCTGCCGTCGACAAGGAGAAGATACTAGACAAC GGAGTAATCAAACGCGTTTTCAATCCTTATGGCTCCGCCGCTTACAGTTTCATCACAATGGGGACTTACAGAGGCGGCCTCAACACCTTCGCTATTAACG GTCTTGCTTCCAAACCTCTCCACCTCTACTCCAAGTCCACTTACCAATGCGAGTGGCTTCCTGATTCGTCTTCCAATTCCTCCTCTGCTCCCAAGCCGGC AACCACTGTCGGGTACACGATGCTGCCCGATTGGGGCTACGGACGGGTATACACAGTCGTCATAATAAACTGTACCTTCTCACAACCAATCAACACCGAC AATTCCAGAGGCAAGCTGTACCTCCTCGCCTCCACTCCCAGGGGTGGGGACACAAAATTCAACACCACCGACCGCTTCGAGATACTGGACGAGCCCAAGG GGAGCGTCGATTTCGTTGTTTTCAAATCGAAGCCGAAATACGATTGCCTCTACTGCATGTCTTCCCTGTACGGGCAGCTGAGTCCGCAGAGGGTAAGGGA GTGGATTGCATACCACGTCCGGCTGTTTGGAGAGAGATCTCATTTTGTGATTCACGACGCCGGCGGTGTCTACGACGAGGTGTATGACGTGCTGAAGCCG TGGATGGATCTCGGGTATGTGACGCTGCAAGACATCAGGGAGCAGGAGAGATTCGACGGTTACTATCACAATCAGTTCGTGGTGGTGAACGATTGCCTTC ACCGCTACAAGTTTATGGCCAAATGGATGTTTTTCTTTGATGTGGACGAGTTCATTTATGTTCCCCCAAAGAGCACCATCAAATCAGTGCTGGATTCCCT TTCCGAGCATTCACAGTTCACCATTGAACAGATGCTTATGAACAGCAAGCTCTGTCTAACCGCCGACTACGGCCGATATTACAGGAGATGGGGGTTGGAG GAGCTAGTGCACAAGGACGCCAAGACAGGGATAAGGAGGGACATGAAGTATGCAATCCAGCCGCGGAATGTGTACGCCAACGGGAGTACATATGTCGCAG AACTTGGCAGGGAAAACAACCCACAAGACGGAAGGGAGGATAAAGTACTACCATTACCATGGGTCGATAGCGCAGAGGAGGGAGCCTTGCCGGAAATTGC TGAATGTGACAAAGACTACCTTCGAGAAGACTCCTTATGTGCTGAATACCACAATGAGGGACATTGCATGGGCTGTCAGGAAATTTGA
AA sequence Show only first row Show all	>Lus10024731 pacid=23159540 polypeptide=Lus10024731 locus=Lus10024731.g ID=Lus10024731.BGIv1.0 annot-version=v1.0 MGIVLNCAPDLKLILIALLILCPVVTLLQFLPSRFIISTSDLRFCISRITTTTTTTTTEPAAIFPLNSSSSSAALTTSHLLVPPPPLPSSAVDKEKILDN GVIKRVFNPYGSAAYSFITMGTYRGGLNTFAINGLASKPLHLYSKSTYQCEWLPDSSSNSSSAPKPATTVGYTMLPDWGYGRVYTVVIINCTFSQPINTD NSRGKLYLLASTPRGGDTKFNTTDRFEILDEPKGSVDFVVFKSKPKYDCLYCMSSLYGQLSPQRVREWIAYHVRLFGERSHFVIHDAGGVYDEVYDVLKP WMDLGYVTLQDIREQERFDGYYHNQFVVVNDCLHRYKFMAKWMFFFDVDEFIYVPPKSTIKSVLDSLSEHSQFTIEQMLMNSKLCLTADYGRYYRRWGLE ELVHKDAKTGIRRDMKYAIQPRNVYANGSTYVAELGRENNPQDGREDKVLPLPWVDSAEEGALPEIAECDKDYLREDSLCAEYHNEGHCMGCQEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44670			Domain of unknown function (DU...		Lus10024731 [exp]	0	1
AT5G01020			Protein kinase superfamily pro...		Lus10037165 [exp]	1.4	0.8346
AT5G44670			Domain of unknown function (DU...		Lus10008076 [exp]	1.4	0.8857
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	7.1	0.8002
AT1G51630			O-fucosyltransferase family pr...		Lus10037328 [exp]	11.0	0.7958
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10035483 [exp]	16.7	0.7729
AT3G49720			unknown protein		Lus10039648 [exp]	16.8	0.7842
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10014288 [exp]	19.6	0.7443
AT5G51010			Rubredoxin-like superfamily pr...		Lus10022430 [exp]	22.2	0.7505
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	26.5	0.7697
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	26.6	0.7955

Compare expression of checked genes

Lus10024731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.