Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018806 [exp] 39 / 0.0004 ND 37 / 0.006
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024734 pacid=23159571 polypeptide=Lus10024734 locus=Lus10024734.g ID=Lus10024734.BGIv1.0 annot-version=v1.0 ATGGCGACTTCAACCCAGTACTTCAACTTTGCGCAGCTAGTGCGATCCGATCACCCTCCTTCCCTCGGCGGAAGAGGGCGGAACACGGCAGAATGCGTTC CTAGACAGGAGGTCTTCATGACAGATGGCAACTCTTCTAGGGACTCCGAAACCATTCCCTCAAGGCGAATCACACATTGTGTTGTCCCAGATGAGCCTAG TGACGGTACGATCAGTCTGATGAATGATCCGCTACCCGAGCTCTTCTCGTTATCAGAGAGGTGGCAGCAAGTGGGAGTAGGAAATGCTAGACACGGAGAT GGACCGCGTCCTAGGATACTTAATGGCTTGCATCACCAACACGTTCGTGAAAGATAG
AA sequence Show only first row Show all	>Lus10024734 pacid=23159571 polypeptide=Lus10024734 locus=Lus10024734.g ID=Lus10024734.BGIv1.0 annot-version=v1.0 MATSTQYFNFAQLVRSDHPPSLGGRGRNTAECVPRQEVFMTDGNSSRDSETIPSRRITHCVVPDEPSDGTISLMNDPLPELFSLSERWQQVGVGNARHGD GPRPRILNGLHHQHVRER

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024734 [exp]	0	1
					Lus10039973 [exp]	1.0	0.9807
					Lus10029489 [exp]	5.1	0.9162
					Lus10020988 [exp]	6.2	0.7846
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	6.7	0.9033
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	7.7	0.9033
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	8.7	0.9033
					Lus10003695 [exp]	9.5	0.9033
					Lus10003774 [exp]	10.2	0.9033
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	11.0	0.9033
					Lus10033071 [exp]	11.6	0.9033

Compare expression of checked genes

Lus10024734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.