Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 180 / 2e-50 disease resistance family protein / LRR family protein (.1) AT1G74190 149 / 9e-40 AtRLP15 receptor like protein 15 (.1) AT1G74170 144 / 4e-38 AtRLP13 receptor like protein 13 (.1) AT3G05660 135 / 5e-35 AtRLP33 receptor like protein 33 (.1) AT5G49290 134 / 1e-34 ATRLP56 receptor like protein 56 (.1) AT3G05370 134 / 1e-34 AtRLP31 receptor like protein 31 (.1) AT1G55610 132 / 6e-34 BRL1 BRI1 like (.1.2) AT3G53240 131 / 1e-33 AtRLP45 receptor like protein 45 (.1) AT3G13380 131 / 2e-33 BRL3 BRI1-like 3 (.1) AT2G33060 129 / 4e-33 AtRLP27 receptor like protein 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006948 [exp] 531 / 0 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 209 / 9e-61 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 207 / 6e-60 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 206 / 2e-59 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 206 / 2e-59 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016325 [exp] 194 / 9e-59 AT2G34930 206 / 4e-59 disease resistance family protein / LRR family protein (.1) Lus10039512 [exp] 202 / 5e-58 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2) Lus10016341 [exp] 200 / 2e-57 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 199 / 3e-57 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196766 [exp] 211 / 1e-63 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 213 / 2e-62 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 212 / 6e-62 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 209 / 4e-61 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 207 / 5e-60 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 207 / 6e-60 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 202 / 4e-58 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 189 / 1e-53 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 188 / 2e-53 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 188 / 3e-53 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10024736 pacid=23159556 polypeptide=Lus10024736 locus=Lus10024736.g ID=Lus10024736.BGIv1.0 annot-version=v1.0 ATGCTGGGAACAGTTGTCGGCCTTGTGGTTGTGGATATTTCAAACAACAATTTATCAGGTAAGATTCCTATCTCAGTGGGACTGCTGGGAACACTGGGAA TGCTGTTGTTGAGCGAAAACAATCTAGTTGGAGAAATCCCATCCTCATTGCAGAATTTATCAGCCTTGACAAGCATTGATCTGGGAGAAAATCAGCTCAT AGGGGAAGTACCTTGGTGGATCGGAGAAAAGTTGTCGGCCACCATCGTGCTTCGCCTTCGATCAAACAAGTTCCAGGGCCAGATCCCAGAATCACTGTGC AACCTCCAGCAGCTTCATCTCGTGGACCTATCAAACAACAACCTTTCAGGTGGGATTCCCAAAATGCCTGCACAACCTTCCCTGGTGTACGGAAACAGCA GTGAGTTGTACTACCAAAACTTCCAATTCCGTATGGCCTACTTCAAAGAAGAAACCACAGTGGTGACCAAAGGGAGAGCCTATGATTGCCATAGAAACAT AGCTCTGCTCAACGTTATCAACTTGTCTATCAAGCTCCTAGCCGTCCAGGTCATGAATCTATCAAGCAACCATATAAGTGGAGGCATTCCAGAGAAACTT GGGGGTTTGAAAGACCTGGAAACATTGGACTTGTCCTATAACCAGCTCTCTGGGGAGATCCCTGCAGGTTTGTCATCTTTAACATTTTTGACAAATTTAG TCTTGTCATACAACAACTTTTCAGGGAAGATACCAACGGGAAGTCAACTCCAAACATTTGACGCATCTAGCTTTGAGAGTAACCCATTTCTCTGTGGGTT TCCTTCAACAGTTAACCGCACCATGGATAGAACAACAACCTCAAGTGTTGCAGAACCAGAAGATGAAACTGACAAGGACAAATTGTTTGAACTGGGTACA GGTTTATATGTTAGCATTGCACTGGGTTTTGTGATCGGGTTCTTGGGACTCTGTGTAACTCTACTGAGAAAAGAGTTCATACAAAAAGAAGACAGCGAAT GGTAG
AA sequence Show only first row Show all	>Lus10024736 pacid=23159556 polypeptide=Lus10024736 locus=Lus10024736.g ID=Lus10024736.BGIv1.0 annot-version=v1.0 MLGTVVGLVVVDISNNNLSGKIPISVGLLGTLGMLLLSENNLVGEIPSSLQNLSALTSIDLGENQLIGEVPWWIGEKLSATIVLRLRSNKFQGQIPESLC NLQQLHLVDLSNNNLSGGIPKMPAQPSLVYGNSSELYYQNFQFRMAYFKEETTVVTKGRAYDCHRNIALLNVINLSIKLLAVQVMNLSSNHISGGIPEKL GGLKDLETLDLSYNQLSGEIPAGLSSLTFLTNLVLSYNNFSGKIPTGSQLQTFDASSFESNPFLCGFPSTVNRTMDRTTTSSVAEPEDETDKDKLFELGT GLYVSIALGFVIGFLGLCVTLLRKEFIQKEDSEW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10024736 [exp]	0	1
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10004810 [exp]	5.0	0.9400
					Lus10042766 [exp]	8.7	0.9006
AT2G44420			protein N-terminal asparagine ...		Lus10033495 [exp]	10.6	0.9315
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10031516 [exp]	12.3	0.9108
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	13.9	0.9136
AT4G27745			Yippee family putative zinc-bi...		Lus10000335 [exp]	14.4	0.8971
AT4G30230			unknown protein		Lus10036511 [exp]	15.0	0.8969
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	16.5	0.9230
					Lus10025502 [exp]	17.7	0.9091
AT1G55160			unknown protein		Lus10011503 [exp]	18.8	0.9080

Compare expression of checked genes

Lus10024736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.