Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 788 / 0 disease resistance family protein / LRR family protein (.1) AT4G04220 246 / 2e-69 AtRLP46 receptor like protein 46 (.1) AT1G74170 243 / 5e-67 AtRLP13 receptor like protein 13 (.1) AT1G74180 228 / 2e-62 AtRLP14 receptor like protein 14 (.1) AT1G74190 225 / 3e-61 AtRLP15 receptor like protein 15 (.1) AT4G20140 224 / 2e-60 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G46330 219 / 8e-59 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 217 / 2e-58 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT3G53240 216 / 2e-58 AtRLP45 receptor like protein 45 (.1) AT1G75640 217 / 3e-58 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006948 [exp] 619 / 0 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10006945 [exp] 471 / 3e-160 AT2G34930 288 / 2e-90 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 434 / 4e-137 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 417 / 2e-130 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 417 / 4e-130 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 411 / 1e-127 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 398 / 3e-123 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 398 / 6e-123 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 397 / 9e-123 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106900 [exp] 489 / 4e-158 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 489 / 6e-158 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 453 / 6e-144 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 399 / 4e-124 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 391 / 4e-121 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 385 / 5e-119 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 385 / 6e-119 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 367 / 1e-112 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 350 / 1e-105 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 341 / 7e-102 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024737 pacid=23159570 polypeptide=Lus10024737 locus=Lus10024737.g ID=Lus10024737.BGIv1.0 annot-version=v1.0 ATGAAAATGCAAAGTTTCATAACCAATGTCACCATTCTGCTTTTCTTCTCCTTTCTGTGTCTTCCTTCTTTTGGTAATGCCAAATGCAGAAATATAGATA GAGAAGCACTCCTTACCTTGAAGAATGGCCTTATAGACCCCTCAGGAAGGCTTTCTTCCTGGCAGGGTGATGATTGCTGCAACTGGGTAGGCATCAAATG CAGCAACAGTTCCACTGTCACCCAACTGAACCTTAGAAACCCTTACCCTTTAATCAATGCTGGAAGCATTGACCAGGAAGCTTTCAAGGCTTCCTGCTTA AGTGGTAACATCAGTTCCTCTCTACTCGCCCTCTCATCTCTGACCTATCTAGACATAAGCCTCAACGACTTTCAAGGTGCCGAAATTCCCAACTTCCTCG GCGGCCTCAACAACTTGAGGTACCTCAACCTCTCCTACTCTTCATTTGGTGGAGAAATTCCATCTCAGCTTCGAACCCTGTCCAACTTGGAAGTTCTGGA TCTCTATGCTGATTCATACGCTCGAAACGGTCCAGTCGAGTTAAGAGTGTCCAATCTCGATTGGCTCTCTACTCTTTCCTCACTCAAGTACTTGAACATG GGGTCCGTGAGAATCATGAATACAAGTAATGATGGTGGAGATTGGCTCCGTGCTGTTAATATGCTTCCATCATTGGTGGAGTTGCATCTTCATTACTGTC ACCTCCAAGTCCTTCCCCAATCACTTCCCTTCATTAACTTTACTTCCCTTTCTGTCCTTGATTTGTCCGATAACTCTTTCAATTCTCCAATTCCACCATG GCTGTTCAAACTCACCAGCCTCAAGGAACTCTACCTCAGATGGAACTTCCTCAATGGTCCCATCCCTAAAGAGCTTTCCTTGCTCAAGTCCCTGCAAGTT CTTGATCTGTCCAACAATTTGGAGTTTGGAGGTCAGGTTCCTGCAGGAATATTTACAAGTCTGAGAAAGTTGAAGATGCTGGACCTTTCAGCCAATAACT TGAAAGGTGGAATCCATGGTTTCCTGCAAGGATTTACAGACAACAGCTTGATGTTTCTGGATTTGAGTTCCAACTCGATGGAAGGTGAAATTCCTGACTC GTTAGGACTGCTTCAGAACTTGCAAAGACTTGATCTGTCTAGCAATGGATTCAGTGGCTCAATCCCAAATTCTATTGGAAAGATGTCGTCTTTGAACTAC TTGGATCTTTCTTACAACAACATGGATGGGAGTATTCCGGAGAGTTTCGGGCAACTTTCGGAGCTGGTTGATGTGAACTTATTAACAAATTCTTGGGGAG GGGTTATCAGACAAGCTCACTTAGTGAACCTCCGAAGCCTGAAGACCATACGGCTAGCAACGGATCCAAATCGTTCTTTGATCTTTGATGTTCCAGCCCA ATGGGTTCCTCCCTTCAAGCTCACATCCATTCAACTCGAAAACTGCATCGTTGGTCCTTCCTTTCCTACGTGGCTCAGTGTGCAGAATGAACTCACTTCT GTCTCTCTCAGAAATGTTGGGATTTCAGACACCATACCAAGCCAATGGTTCTCAAGCTTACCTTCTGAACTAACTTTTTTGGTCATATCAAACAACCAAA TCACAGGAAAGCTACCAAGCAACCTCAAGTTTCCGAGACTAAGCACTATTGATCTTAGTTCCAACAAGTTTGAAGGTCCTCTCCCAGCTTGGTCCACCAA TGCAACCGTGGTGTATCTCCAAGACAATAAGTTCACAGGGCAAATACCTGACAATATTAGCAAACTAATGCCAAGGCTTGAGAAACTATACCTGTCACAG AACCATCTTAATGGTAAGATCCCATCCACCATTTGTGATCTGCAGGAGCTCCAGATTCTCTCTCTCAGGAACAACCTGTTTTCAGGACAACTCCCAGACA GTTGGTACCATTCCTTCATGCTATGGGCTATAGATATATCAAACAACAGTATAACTGGTAACATCCCAACTTCATTCGGTTCCTTACCTTCCCTTAGCGT TCTGTTGTTAAGCAGCAACCAACTCGTTGGAGAGATTCCTGCTTCCCTGAAAAATCGCACCGGAATAACAAGCATGGATCTCGGAGGGAACAGATTAACA GGGATCTTACCTGCCTGGATAGGGGAAAAGTTCCAATCCCTTTTTATGTTGAACCTGCATTCAAACGCTTTCAGCGGACCAATCCCACCACTCTGCAGTC TTCCAAATCTTCACATCTTGGACATCTCTGGTAATAAGTTCTCAGGGCCTGTACCCAAGTGTGTTGGCAACCTGACAGCCATGGCAGCAGGTAAGAGCGG TGATGTCTTTGCACAGCTATTAACAGTAGCAATGAAGGGGAGGAAAGTGGAGCTGGATAGCATTCTAGCAAATATCAACACCATTAACCTATCTGGAAAC AATCTGACTGGAGATATCCCTGGCGACATCATTAACCTCTCTGCATTGAGAATCCTCAACCTCTCCAGAAATCAGCTGAGTGGTAAGATTACAGAGAAGA TTGGAGAGCTGCAGCATTTGGAAGCACTTGACCTGTCACACAACCATGTGATGGGTTCAATACCACAAAGCTTGGTTTCTATAGTTTCGTTGGTTCACTT GAACTTATCATACAACAGCTTGGAAGGAAGAATTCCCATTGGACTCCAGAAATTCAATGACCCATCTGTGTTCTATGGCAATCCATCACTATGTGGGAGT CCTCTTCCCCCATGCCCCGGAGCCAATCCAACCTCTTAA
AA sequence Show only first row Show all	>Lus10024737 pacid=23159570 polypeptide=Lus10024737 locus=Lus10024737.g ID=Lus10024737.BGIv1.0 annot-version=v1.0 MKMQSFITNVTILLFFSFLCLPSFGNAKCRNIDREALLTLKNGLIDPSGRLSSWQGDDCCNWVGIKCSNSSTVTQLNLRNPYPLINAGSIDQEAFKASCL SGNISSSLLALSSLTYLDISLNDFQGAEIPNFLGGLNNLRYLNLSYSSFGGEIPSQLRTLSNLEVLDLYADSYARNGPVELRVSNLDWLSTLSSLKYLNM GSVRIMNTSNDGGDWLRAVNMLPSLVELHLHYCHLQVLPQSLPFINFTSLSVLDLSDNSFNSPIPPWLFKLTSLKELYLRWNFLNGPIPKELSLLKSLQV LDLSNNLEFGGQVPAGIFTSLRKLKMLDLSANNLKGGIHGFLQGFTDNSLMFLDLSSNSMEGEIPDSLGLLQNLQRLDLSSNGFSGSIPNSIGKMSSLNY LDLSYNNMDGSIPESFGQLSELVDVNLLTNSWGGVIRQAHLVNLRSLKTIRLATDPNRSLIFDVPAQWVPPFKLTSIQLENCIVGPSFPTWLSVQNELTS VSLRNVGISDTIPSQWFSSLPSELTFLVISNNQITGKLPSNLKFPRLSTIDLSSNKFEGPLPAWSTNATVVYLQDNKFTGQIPDNISKLMPRLEKLYLSQ NHLNGKIPSTICDLQELQILSLRNNLFSGQLPDSWYHSFMLWAIDISNNSITGNIPTSFGSLPSLSVLLLSSNQLVGEIPASLKNRTGITSMDLGGNRLT GILPAWIGEKFQSLFMLNLHSNAFSGPIPPLCSLPNLHILDISGNKFSGPVPKCVGNLTAMAAGKSGDVFAQLLTVAMKGRKVELDSILANINTINLSGN NLTGDIPGDIINLSALRILNLSRNQLSGKITEKIGELQHLEALDLSHNHVMGSIPQSLVSIVSLVHLNLSYNSLEGRIPIGLQKFNDPSVFYGNPSLCGS PLPPCPGANPTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10024737 [exp]	0	1
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10028755 [exp]	1.7	0.8050
AT3G51380		IQD20	IQ-domain 20 (.1)		Lus10041844 [exp]	2.8	0.7894
					Lus10026392 [exp]	4.9	0.7773
					Lus10036759 [exp]	6.0	0.7868
AT3G14130			Aldolase-type TIM barrel famil...		Lus10008133 [exp]	12.0	0.7217
AT2G34930			disease resistance family prot...		Lus10006945 [exp]	17.7	0.7669
					Lus10039779 [exp]	19.1	0.7259
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021871 [exp]	19.8	0.6795
					Lus10018550 [exp]	20.8	0.7511
AT3G47570			Leucine-rich repeat protein ki...		Lus10030847 [exp]	21.4	0.7346

Compare expression of checked genes

Lus10024737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.