Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35830 92 / 5e-21 VQ motif-containing protein (.1) AT5G65170 86 / 2e-18 VQ motif-containing protein (.1) AT4G39720 74 / 1e-14 VQ motif-containing protein (.1) AT2G41010 42 / 0.0003 ATCAMBP25 calmodulin (CAM)-binding protein of 25 kDa (.1) AT3G22160 41 / 0.0005 VQ motif-containing protein (.1) AT4G15120 40 / 0.0006 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006941 [exp] 299 / 3e-99 AT1G35830 93 / 3e-21 VQ motif-containing protein (.1) Lus10016814 [exp] 43 / 0.0001 AT4G39720 52 / 4e-08 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094900 [exp] 93 / 8e-21 AT1G35830 89 / 1e-19 VQ motif-containing protein (.1) Potri.005G166100 [exp] 92 / 1e-20 AT5G65170 94 / 8e-21 VQ motif-containing protein (.1) Potri.005G076600 [exp] 90 / 1e-19 AT5G65170 70 / 7e-13 VQ motif-containing protein (.1) Potri.007G091600 [exp] 77 / 4e-15 AT5G65170 72 / 2e-13 VQ motif-containing protein (.1) Potri.001G158800 [exp] 53 / 5e-08 AT4G39720 58 / 6e-10 VQ motif-containing protein (.1) Potri.003G075800 [exp] 48 / 3e-06 AT3G22160 54 / 8e-09 VQ motif-containing protein (.1) Potri.006G032300 [exp] 44 / 0.0001 AT3G56880 127 / 1e-35 VQ motif-containing protein (.1) Potri.016G029600 [exp] 42 / 0.0003 AT3G56880 125 / 4e-35 VQ motif-containing protein (.1) Potri.006G006300 [exp] 41 / 0.0006 AT4G39720 49 / 2e-06 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10024738 pacid=23159530 polypeptide=Lus10024738 locus=Lus10024738.g ID=Lus10024738.BGIv1.0 annot-version=v1.0 ATGAATCCATTTGGGAGTTTTTCCTCCTCCTCCAACTCCTCCCACGTACACAACAAATTCAACAATACATCATCACTTTTCTCCAACCAACATCCGCCCT CTTTATTATTCGATCCAAACTTGTTCCAGACGACGAATTTCTCTCATCATCAACAACCATCTGCTGCTTCTTTCTTGAATCTGGACATGCTACCTTCCTC CCAACTCCAGAATCAGATGCTACGATCTGGGCCCACTTCTGCTTCATCATCATCACCTTATGACCCTCCTCCTCCTTCCCATTCTATCAAGTTGTTAAGA TCTCACAATCATCACCCTCCTCATCCTTCCTCCTCCATTATAACTCCTCCACCTATGCCTTGTAATAATTACACCACCACTAGTACTAGTACTGTACCAA CAGCAGCAGGAGTAGGAGGAGGAGGGAGGAATTCTTATAATCATCATAATAATCCAATAAGTCTAAATCCAAATCAAAGAAGTGGCCACGTGGCTAGCCG GAACCCGAAGAAGAGAACCCGGGCATCTAGACGGGCACCCACCACCGTCCTCACCACCGACACATCCAACTTCCGAGCAATGGTTCAAGAATTCACCGGC ATCCCACCTCCCCCTTTCTCAACTCCCTACTCTCGAAGCACCTTTGATCTTTTCAGATCAAATCAATTCGACGATACAACGACAACAACTACAACAACAA TGACCTCTCTCCTCTACCCACTCCGTCCTTCCCCGCACAAGCTTCCCCCTTTCAGCAGTAACTACCAGCTGGTAGGTTCATCAGATCTTCATCAGACGAC ACCCTCAATGATGAGCCAAATGTTGTCAGCTCTCAGCTCCGTCCCCAACAAGTGTCAATCCACACCGCCTCCTGTAGCATTGAGTTCCCTTCACCACGAC GTTGACCATCATCAATGGGGAGACATGCCTTCCAACACCAGTCATATTATCAATCAAGATCACCATGATGATCACAAGGATAAGTTGGACAATCTTACTT CTTCAAGAGATCATGATCAAGGTAGATTCGATTCGTGGAGTTGTCCAACTACTACTACTGACTAG
AA sequence Show only first row Show all	>Lus10024738 pacid=23159530 polypeptide=Lus10024738 locus=Lus10024738.g ID=Lus10024738.BGIv1.0 annot-version=v1.0 MNPFGSFSSSSNSSHVHNKFNNTSSLFSNQHPPSLLFDPNLFQTTNFSHHQQPSAASFLNLDMLPSSQLQNQMLRSGPTSASSSSPYDPPPPSHSIKLLR SHNHHPPHPSSSIITPPPMPCNNYTTTSTSTVPTAAGVGGGGRNSYNHHNNPISLNPNQRSGHVASRNPKKRTRASRRAPTTVLTTDTSNFRAMVQEFTG IPPPPFSTPYSRSTFDLFRSNQFDDTTTTTTTTMTSLLYPLRPSPHKLPPFSSNYQLVGSSDLHQTTPSMMSQMLSALSSVPNKCQSTPPPVALSSLHHD VDHHQWGDMPSNTSHIINQDHHDDHKDKLDNLTSSRDHDQGRFDSWSCPTTTTD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35830			VQ motif-containing protein (....		Lus10024738 [exp]	0	1
AT5G40470			RNI-like superfamily protein (...		Lus10022269 [exp]	2.8	0.9141
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10027197 [exp]	3.2	0.8866
AT1G31130			unknown protein		Lus10028643 [exp]	4.7	0.9229
AT2G45210			SAUR-like auxin-responsive pro...		Lus10001985 [exp]	5.5	0.8756
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	6.5	0.9252
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042927 [exp]	9.0	0.8686
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	13.0	0.8726
AT1G51200			A20/AN1-like zinc finger famil...		Lus10004889 [exp]	14.3	0.8754
AT5G58320			Kinase interacting (KIP1-like)...		Lus10019111 [exp]	14.3	0.8589
AT1G35830			VQ motif-containing protein (....		Lus10006941 [exp]	14.3	0.9182

Compare expression of checked genes

Lus10024738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.