Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03090 277 / 2e-83 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006938 [exp] 759 / 0 AT4G03090 450 / 6e-148 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135700 [exp] 444 / 3e-146 AT4G03090 692 / 0.0 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2) Potri.002G213400 [exp] 439 / 5e-145 AT4G03090 638 / 0.0 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024745 pacid=23159549 polypeptide=Lus10024745 locus=Lus10024745.g ID=Lus10024745.BGIv1.0 annot-version=v1.0 ATGCCATCAAGGGTCAGACTCCTGATGCCAATCCGAGCCTTCAGTGCCGGAGCTACAAAGGAGACAACGGTCGTCCGCTCCTTAACTTCTTGTGATATCC ATTGCGCGTTGCCGGTGAAATCGTGTTCGATAAGGAGAGAGATCGAGGAAGGCCGCGGTTGTTACAATGAGCTAAAGAAAATTTTGCTAGCTAGTGTTGG TGCATTTGGAGCTGCTTTACACATGCTAACTTCAGATTTTTCGGTTTTGGGCTATAGGATGAAGCTGATAAGGGACATACCCTTGAATACTGCTGATACG GTTATTGACTTGACTGTTGCTGTTAGAGAGTTGCATGGGCTTGGGTCGCAGGAGATTAGTAAATTGCTAAGTGATGCTGAAAATTTGGTTATTCAATTGC CCTCCGGAAATGGAGTAGCGATTGACATGGAAAAGCTAGCCGTCTTTCTTCCGATGCATCTTATAGCAGTGTTGTTGTCATCCCGTGGAGATGAGCCTGC CTTGACATATGTACTGTGTGGGTTTCGGCTGTTGCATGTCTTGTATGACCTAGCACCTCGTCATAGCAAACTAGAGCAGATCTTACTTGACGATGTGAAA GTGTCAGAACAGCTGCTGGATCTGATCTTTTATTTACTGATTATAATTAACGGTCATCAAAAGGAGAACCTTCATTCAAGCTCACCCTCTCTTCTAGTTC CAGCTGCAGTAGCATGTAGTCTATACCTATTGACGGGTGCAATATCTACCCAGTGGCAAGATCTTGTTCAAGTTCTTCGTGCACACTCCAAGGTCAACCT ATTTATGGATGTTGCTTTTGGAGCTGTTCATGTAGCTGTTAGGTCTCTTCAGGTCAAGTTGTCAGCTCAAATTACTAGCTCTCAGATGACATCAAATCCA ACAGTTGAACAAACTATTAACTATCTTTGCCAACAATGCGAAGCTTCTATACAATTTCTTCATTCTTTGTGCCAACAAAAGCTGTTTAGAGAACGTTTTC TCAGGAGCAAGGAACTGTGTGCAAAAGGCAGTGTTCTTTTTCTGGTCCAAAGACTCTTGAAGTTAAAGATAACTTCTCCAGTTTTGGAATCTCCTAGAGT CGTTTCAAGTCTATCTAGAATCAAAGCTAAAGCGTTATCCATTCTGTTAAATCTTTGTGAAGCTGAAAACATTTCTTATCTTGATGAGGTAGCACGCTCT CCAGGAACCCTGGAGGTAGCAAAGTCGGTTGCTTTGGAGGTACTGGAAGTACTCAGAGTTGGCATATGCAGAGGAGGCAGACGTCTTTCAGCTTGTCCTA CCAAATCTTCCCCCACTGGGCTTCTCCAACTCAATGCACTTCGACTAGCAGATGTTTTCTCAGATGACTCAAGTTTCCGGTCCCACATTACGACAGCCTT TGCTTGCTTTGTCCTATCACCTTCTTTTGGTACATGGTTCTGGATGGAGAGTTTACAGAAAGGTCTTGCTCAAGCTATGGGGGAATCTTGTAACTTTGAG GTGGTGGCACGCAGTAGTGCTGGAGCAATCTCTCATGGAAGTTGTGAAGGAATCTGGTTAAAAAGAATCGCAAGTGTGAGGCATCCATAG
AA sequence Show only first row Show all	>Lus10024745 pacid=23159549 polypeptide=Lus10024745 locus=Lus10024745.g ID=Lus10024745.BGIv1.0 annot-version=v1.0 MPSRVRLLMPIRAFSAGATKETTVVRSLTSCDIHCALPVKSCSIRREIEEGRGCYNELKKILLASVGAFGAALHMLTSDFSVLGYRMKLIRDIPLNTADT VIDLTVAVRELHGLGSQEISKLLSDAENLVIQLPSGNGVAIDMEKLAVFLPMHLIAVLLSSRGDEPALTYVLCGFRLLHVLYDLAPRHSKLEQILLDDVK VSEQLLDLIFYLLIIINGHQKENLHSSSPSLLVPAAVACSLYLLTGAISTQWQDLVQVLRAHSKVNLFMDVAFGAVHVAVRSLQVKLSAQITSSQMTSNP TVEQTINYLCQQCEASIQFLHSLCQQKLFRERFLRSKELCAKGSVLFLVQRLLKLKITSPVLESPRVVSSLSRIKAKALSILLNLCEAENISYLDEVARS PGTLEVAKSVALEVLEVLRVGICRGGRRLSACPTKSSPTGLLQLNALRLADVFSDDSSFRSHITTAFACFVLSPSFGTWFWMESLQKGLAQAMGESCNFE VVARSSAGAISHGSCEGIWLKRIASVRHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03090			sequence-specific DNA binding;...		Lus10024745 [exp]	0	1
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010314 [exp]	3.5	0.9435
AT1G27590			unknown protein		Lus10028228 [exp]	4.0	0.9368
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10013411 [exp]	5.5	0.9426
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10004570 [exp]	6.2	0.9314
AT4G03090			sequence-specific DNA binding;...		Lus10006938 [exp]	8.0	0.9425
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10019026 [exp]	9.5	0.9366
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	10.9	0.9426
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10000909 [exp]	13.9	0.9323
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014157 [exp]	14.5	0.9384
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10013625 [exp]	17.5	0.9389

Compare expression of checked genes

Lus10024745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.