Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03090 282 / 2e-85 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006937 [exp] 747 / 0 AT4G03090 173 / 3e-47 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2) Lus10006938 [exp] 265 / 7e-81 AT4G03090 450 / 6e-148 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135700 [exp] 513 / 4e-173 AT4G03090 692 / 0.0 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2) Potri.002G213400 [exp] 419 / 1e-137 AT4G03090 638 / 0.0 sequence-specific DNA binding;sequence-specific DNA binding transcription factors (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024746 pacid=23159553 polypeptide=Lus10024746 locus=Lus10024746.g ID=Lus10024746.BGIv1.0 annot-version=v1.0 ATGCTAGAAACTAACCTCATCTCAAGTAGTATGCCTCAAACTTCCTATTCTCACCAGAGGACTTCACTATTTGTTAAAGTAATTGCCAACCTCCATTGTT TTGTTCCCAGCATTTGTGAAGGTCACTTCGATTCCCCTGCTTCTCTTGTAATGTATAACATGTTGGATCTGCTTGCTCTTCTTTTGACAAAGTTCAACTC CTTTTGCTTATTCTCAGAGCAGGAGAGGAACCTCTTCCTTCACAAGTTTCTTGAGTGCATGCGTCTGGATCCAGCTGAATCGTTGCCTGGATTTCCGTTT AGCCATGGAACGCAAAAAGCTGCAACTGTTTGCAGGAACTTGCGTTCATTATTATGTCACGCTGAATCCTTGATTCCTAACTTCTTGAATGAAGAGGACG TGCAACTCTTGAGGGTATTCTTTAATCAATTACAGGCAATGATCACTCGTGCTCATTTTGAGGAAACGAAGTATGAGAAATCAGTGTCTTTGGATAAGTT CTCGAAGCTAGACATCAATGATCAGGAGGTTCAAAGCTCAGTACCTTTGCATGAGAAGGAACTTTCAAATGCACCTCACAGAATCGACAACCACAAGGAG GAAACTATAGAGATTTCTGCTCCGAAAGAGGAGCAACCTAATTTGAGACGCGAGGACATGAATAATGGGGAGATAGTGAGGCGTGGGTCAACTACCTTGA GGGATCTCGACAGCAATGTTCAGAATGTTGAAACTAGTAGCTCAGACACGAAAGCTGCAAGAGGGAAGAATTACGTTGATCATACTGAGCTCTCCAACCC TGGGAGAAATGACAAAGAAAGTGGAGCTCAGCAAAATCAGGAGGATGAAAAAATTGAAGCTGGTCAATCTGAAGAGAAGCAACCAAGGAAACGGAAACGA ACTATAATGAATGACTATCAGATATCACTTGTTGAGAAGGCGTTGCTGGATGAACCTGACATGCAGAGGAATGCGATATCCATGCAGATTTGGGCTGATA AATTAAGTCTGCACGGTGCAGAAGTGACGTGTTCGCAACTAAAAAATTGGCTTAACAATCGGAAAGCACGACTAGCACGTGTTGGCAAGGATGCACGTGT GGAGGTAGATAATGCTTCTCCTCAAATGAAGCAAGCTGTACCGCAGCAATCTCGCGACTCAGCTGAGAGTCCTGCTGAAGATAATGCACCATCTAGTGGA AGAGGTACAAGTGAAAGCACATGGATTCATATGGCAAGGGATCTTGTAAATTGCGCGAGACAACCTCTCCAATACAGTTTAGGACAGAGAGTTGTGTTGG TGGATGGGCAAGGTTCGGAGGTTGCCAAGGGGAAGGTAAGTCAGGTGAAGGGTAAATGGTATGGAAAGAGCTTGGAAGATGATTATGATTCATCTGCTGC TGCTGGCTTGTGCGTTGTAGATGTGACTGAGCTAAAGGCTGATCGATCGACTCAGATACCGTATCCATCAGAGACCACAGGGGCTACTTTTGGTGAGACG GAATCTAGAATTGGAGAAATGAGAGTGTTGTGGGATCCTAAACACTTGTATCTCTTGCGCTCTGGATGA
AA sequence Show only first row Show all	>Lus10024746 pacid=23159553 polypeptide=Lus10024746 locus=Lus10024746.g ID=Lus10024746.BGIv1.0 annot-version=v1.0 MLETNLISSSMPQTSYSHQRTSLFVKVIANLHCFVPSICEGHFDSPASLVMYNMLDLLALLLTKFNSFCLFSEQERNLFLHKFLECMRLDPAESLPGFPF SHGTQKAATVCRNLRSLLCHAESLIPNFLNEEDVQLLRVFFNQLQAMITRAHFEETKYEKSVSLDKFSKLDINDQEVQSSVPLHEKELSNAPHRIDNHKE ETIEISAPKEEQPNLRREDMNNGEIVRRGSTTLRDLDSNVQNVETSSSDTKAARGKNYVDHTELSNPGRNDKESGAQQNQEDEKIEAGQSEEKQPRKRKR TIMNDYQISLVEKALLDEPDMQRNAISMQIWADKLSLHGAEVTCSQLKNWLNNRKARLARVGKDARVEVDNASPQMKQAVPQQSRDSAESPAEDNAPSSG RGTSESTWIHMARDLVNCARQPLQYSLGQRVVLVDGQGSEVAKGKVSQVKGKWYGKSLEDDYDSSAAAGLCVVDVTELKADRSTQIPYPSETTGATFGET ESRIGEMRVLWDPKHLYLLRSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	0	1
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	1.0	0.9050
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	1.4	0.8866
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	1.7	0.8651
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10017299 [exp]	2.2	0.8379
AT5G40600		EMB1875	unknown protein		Lus10003647 [exp]	6.0	0.8484
AT4G21510			F-box family protein (.1)		Lus10022370 [exp]	7.3	0.8375
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000830 [exp]	7.7	0.8243
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	9.2	0.8051
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10007300 [exp]	9.4	0.7864
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	10.2	0.8255

Compare expression of checked genes

Lus10024746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.