Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36160 606 / 0 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 600 / 0 ACC2 acetyl-CoA carboxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006934 [exp] 822 / 0 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G169100 [exp] 640 / 0 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.002G092700 [exp] 635 / 0 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF01039 [flax] [poplar] Carboxyl_trans Carboxyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10024747 pacid=23159567 polypeptide=Lus10024747 locus=Lus10024747.g ID=Lus10024747.BGIv1.0 annot-version=v1.0 ATGCCTGAAAATTCGTGTGATCCACGGGCTGCTATTGCTGGTGCTGTGGATGGCAGTGGAAAGTGGGTGGGAGGTATTTTTGACAAGGATAGCTTTGTTG AGACGCTTGAAGGTTGGGCAAGGACAGTTGTTACCGGAAGGGCAAAGCTGGGAGGAATCCCGGTAGGGATCGTAGCAGTGGAGACACAGACTGTAATGCA GGTGATCCCAGCTGATCCAGGTCAGCTTGATTCCCATGAGAGAGTTGTTCCTCAGGCTGGGCAAGTATGGTTTCCAGATTCTGCTACGAAAACAGCTCAA GCAATTCTAGATTTCAACAGAGAGGAGCTTCCCCTATTCATTCTTGCGAACTGGAGAGGCTTTTCTGGAGGGCAGAGGGACCTTTTTGAAGGGATCCTAC AAGCTGGTTCTACTATTGTTGAGAACCTCCGAACATACAATCAACCTGTTTTTGTGTACATTCCAATGATGGGAGAGCTTCGAGGCGGAGCATGGGTTGT TGTAGATAGTCAGATCAATTCAGACCACATTGAAATGTATGCTGATCGTACAGCCAAAGGTAATGTATTGGAGCCGGAAGGAATGATTGAGATCAAATTC AGGACAAAGGAACTGATTGAGTGCATGAGTAGGCTTGATCAACCATTGATGGCATTGAGGGAAAAGCTTGACAAGGCCAAGAGGAATGGAGATGGGGGGA CGACGACCATGATAGATTGTATACAGCAGCAAGTAAAAGCTAGGGAGAAGCAGTTGTTGCCAGTGTACACACAGATTGCAACCAAATTTGCAGAGCTCCA TGATAGTTCCCTTAGGATGGAAGCGAAAGGGGTGATCAGAAAAGTGGTTGATTGGGAGATATCTCGTTGGTATTTCTATCAAAGGCTACGGAGAAGAATT GCAGAAGCTTCAGTGGTGAAGACAGTGAGAGAAGCTGGTGGGGAGCAGCAGGTTTCGTATAAATGTGGTATGGATATGGTGAAGAGATGGTTTTTAGAAT CTGATATTGGAGGAGGTAGAGATGATAGTTGGTTGAGTGATGAATGTTTCTTTCGATGGAGAGACGATGATGATGCAAGTAATTACAAACAAAAGCTGCA AGAGTTGAGGGTTCAAAAAGTGCTTTCACACTTGTCCAATATTGGTGCCTCAGAGGCTGATCTGACTGCTCTTCCTCAAGCTCTGGCTGCCCTTCTAACC AAGGTGGAGTCTTCAAGCAGAAGAGGTGAATTGGTTGATGAACTGAGGAAGGTGTTGGGTTGA
AA sequence Show only first row Show all	>Lus10024747 pacid=23159567 polypeptide=Lus10024747 locus=Lus10024747.g ID=Lus10024747.BGIv1.0 annot-version=v1.0 MPENSCDPRAAIAGAVDGSGKWVGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQVIPADPGQLDSHERVVPQAGQVWFPDSATKTAQ AILDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYNQPVFVYIPMMGELRGGAWVVVDSQINSDHIEMYADRTAKGNVLEPEGMIEIKF RTKELIECMSRLDQPLMALREKLDKAKRNGDGGTTTMIDCIQQQVKAREKQLLPVYTQIATKFAELHDSSLRMEAKGVIRKVVDWEISRWYFYQRLRRRI AEASVVKTVREAGGEQQVSYKCGMDMVKRWFLESDIGGGRDDSWLSDECFFRWRDDDDASNYKQKLQELRVQKVLSHLSNIGASEADLTALPQALAALLT KVESSSRRGELVDELRKVLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024747 [exp]	0	1
AT2G20920			Protein of unknown function (D...		Lus10005056 [exp]	2.0	0.8255
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10034326 [exp]	2.2	0.7568
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	8.5	0.7600
AT2G20920			Protein of unknown function (D...		Lus10005055 [exp]	9.2	0.7627
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Lus10018943 [exp]	12.0	0.6624
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10037636 [exp]	12.4	0.7028
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	13.4	0.6846
AT3G05640			Protein phosphatase 2C family ...		Lus10016831 [exp]	13.7	0.6886
AT1G75100		JAC1	J-domain protein required for ...		Lus10032709 [exp]	16.8	0.7698
AT2G44300			Bifunctional inhibitor/lipid-t...		Lus10026220 [exp]	21.2	0.7064

Compare expression of checked genes

Lus10024747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.