Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36160 2347 / 0 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 2276 / 0 ACC2 acetyl-CoA carboxylase 2 (.1.2) AT5G35360 218 / 1e-60 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G03090 197 / 3e-52 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT1G29900 63 / 1e-09 VEN3, CARB VENOSA 3, carbamoyl phosphate synthetase B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006934 [exp] 2880 / 0 AT1G36160 3698 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Lus10003679 [exp] 228 / 2e-62 AT2G01690 614 / 0.0 ARM repeat superfamily protein (.1.2) Lus10017534 [exp] 218 / 1e-60 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028196 [exp] 215 / 3e-59 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 218 / 7e-58 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042623 [exp] 203 / 6e-54 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10042899 [exp] 197 / 1e-53 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10022078 [exp] 122 / 2e-30 AT1G03090 405 / 4e-138 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10042901 [exp] 104 / 4e-23 AT5G35360 491 / 2e-171 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G092700 [exp] 2455 / 0 AT1G36160 3806 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.005G169100 [exp] 2434 / 0 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) Potri.006G078200 [exp] 221 / 1e-61 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.018G146300 [exp] 220 / 3e-61 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G213300 [exp] 207 / 3e-55 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.010G023100 [exp] 58 / 6e-08 AT1G29900 1902 / 0.0 VENOSA 3, carbamoyl phosphate synthetase B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF02785 [flax] [poplar] Biotin_carb_C Biotin carboxylase C-terminal domain CL0105 [flax] [poplar] PF08326 [flax] [poplar] ACC_central Acetyl-CoA carboxylase, central region CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0179 [flax] [poplar] ATP-grasp PF02786 [flax] [poplar] CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain CL0483 [flax] [poplar] PreATP-grasp PF00289 [flax] [poplar] Biotin_carb_N Biotin carboxylase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024748 pacid=23159560 polypeptide=Lus10024748 locus=Lus10024748.g ID=Lus10024748.BGIv1.0 annot-version=v1.0 ATGGTGGTTGTCGGGCGTACAAATGGATACTTGAATAACACGGTTCCGATGAGAAGCTCTGCAGCCGCAGCTACGCAAGTCGATGAATTCTGCCGTGCCC TTGGAGGGAACAAACCAATCCATAGTATTTTGATAGCTAACAATGGCATGGCTGCTGTCAAGTTCATTCGTAGTGTTAGAACATGGGCTTATGAAACTTT TGGCACTGAAAAGGCCATCTTGTTGGTTGCTATGGCTACTCCTGAAGACATGAGAATCAATGCCGAACACATTAGAATGGCTGATCAGTTCGTTGAAGTT CCTGGCGGCACCAACAATAATAACTATGCCAATGTCCAGCTTATTGTCGAGATGGCAGAGATAACACGTGTTGATGCTGTTTGGCCTGGATGGGGTCATG CATCTGAGAACCCTGAACTGCCAGATGCTCTAAATGCCAAAGGGATTATATTTCTTGGACCCTCAGGTCCTTCTATGGGAGCATTAGGGGATAAGATTGG CTCTTCGTTGATTGCTCAAGCTGCTGATGTTCCTACCCTCCCATGGAGTGGCGCTCATGTCAAAATGTCTCAAGAAAGCAGCCTGTTTACTATCCCGGAT TACATTTACAGGCAAGCATGTGTGCATACAACTGAGGAAGCCATTGCTAGTTGTCAAGTTGTTGGTTACCCTGCAATGATCAAGGCATCTTGGGGTGGTG GTGGTAAGGGAATAAGGAAGGTTCACAATGATGATGAAGTTAGAGCATTGTTCAAGCAAGTTCAGGGAGAAGTTCCTGGTTCACCCATATTTATAATGAA AGTTGCTTCTCAGAGCCGACATTTAGAGGTGCAGTTACTCTGTGATCAATACAGTAATGTAGCAGCCTTACATAGTCGTGATTGCAGCGTCCAGAGGAGG CACCAGAAGATTATTGAGGAGGGTCCGATTACCATTACGCCATTGGAGACTGTTAAGAAGTTGGAGCAGGCAGCTCGAAGATTGGCAAAAAGTGTGAATT ATGTTGGTGCAGCCACAGTTGAGTATTTGTATAGCATGGACACTGGGGATTATTACTTTTTGGAACTCAACCCTCGGCTACAGGTGGAGCACCCTGTTAC TGAATGGATCGCTGAGATAAATTTACCAGCTGCCCAGGTTGCCGTTGGGATGGGTATTCCTTTATGGCAAATTCCTGAGATACGGCGATTTTATGGAGTA GAATATAGTGGAGGGTATGATGCTTGGAGGAACACGTCGGCTTTTGCAACTTCTTTTGACTTTGACAAAGCAGAATCTATCAAGCCCAAAGGTCATTGTG TAGCAGTGAGAGTTACTAGTGAGGATCCGGATGATGGTTTCAAGCCTACCAGTGGGAAAGTACAGGAACTTAGTTTTAAAAGTAAGCCAAATGTATGGGC TTACTTCTCCGTCAAGTCTGGAGGAGGTATTCATGAATTTTCTGATTCCCAATTTGGACATGTATTTGCATTTGGGGAGTCTAGAGCTTTGGCTATAGCA AATATGGTACTAGGTCTGAAAGAAATTCAAATCAGAGGAGAAATTCGCACCAATGTTGATTACACTGTCGATCTTCTACACGCTTCAGATTATAAAGACA ACAAAATCCATACGGGTTGGTTGGATAGTAGGATTGCCATGCGGGTTAGGGCTGAAAGGCCCCCTTGGTATCTATCTGTTGTTGGTGGTGCTTTATATAA AGCATCGGCTAGCAGTGCAGCCGTGGTTTCAGATTATGTTGGTTATCTTGAAAAGGGCCAGATTCCTCCCAAGCACATATCACTTGTGAACTCTCAAGTG TCATTGAATATTGAAGGAAGCAAATACACGATTGACATGGTTAGAGGGGGGCCAGGAAGTTATAGATTGAGGATGAACGGTTCCGAGATTGAAGCAGAGA TTCATACTTTACGTGATGGAGGTTTATTGATGCAGGCAAGTGCTCATCTATTAGATGGGAAGAGTCATGTGATATACGCAGAGGAAGAGGCTGCTGGAAC TCGGCTGCTCATTGATGGAAGAACTTGCTTATTGCAAAATGATCACGATCCTTCAAAATTAATTGCAGAGACTACATGCAAGCTACTCAGATATTTGGTT TCAGATGGTAGTCATGTTGATGCTGATACTCCATATGCAGAGGTTGAAGTTATGAAGATGTGTATGCCTCTCCTGTCACCTGCTTCTGGAATTGTTCACT TTAAAATGTCAGAGGGTCAAGCAATGCAGGCCGGTGAGCTTATAGCAAGTCTTGATCTTGATGATCCATCGGCAGTACGAAAGGCTGAACCTTTTCACGG TAGCTTCCCTATATTGGGACCTCCAACTGCAATTTCCGGAAAAGTTCATCAGAGATGTGCTGCTAGTGTAAATGCTGCTCGCATGATTCTTGCTGGCTAT TATCATACCATTGATGAAGTAGTGCAGAACCTGCTCAATTCACTTGATAGTCCCGAACTTCCTTTTCTTCAATGGCAAGAATGTTTTGCTGTTCTGGCAA ATCGCCTTCCTAAAGGGCTCAGAATTGAGTTGGAATCAAGATATAGGGAGTTTGAAGAGATATCTAGGTCTCAGACTGTTGATTTCCCAGCGAAGCTGCT GAGAGTTGTTCTTGAGGCGCATTTATCATCTTGTCCTGACAAGGAGAAAGGAGCCCAAGAAAGGATAGTCGAACCTTTGATGAGTCTTGTGAAGTCTTAT GAAGGTGGGAGGGAAAGTCATGCTAGACTTATAGTTCAGTCACTTTTCGAAGAGTATTTGTCAGTTGAAGAATTATTTAGTGACAATATCCAGGCTGATG TGATCGAACGGCTTCGACTTCAATATAAGAAAGATCTGCTGAAGGTTGTGGATATTGTACTGTCTCATCAGGGTGTGAAGAGTAAAAACAAGCTGATACT AAGGCTTATGGAACAACTGGTTTATCCTAACCCTGCAGCATATAGGGACAAATTGATCCGGTTCTCTCAACTTAACCATACAAGTTACTCTGAGCTGGCT TTGAAGGCAAGTCAACTCCTCGAACAAACAAAACTGAGTGAACTTCGTTCTACTATTGCTAGAAGCCTCTCTGAGTTGGAGATGTTTACTGAAGATGGGG AGAACATGGACACCCCAAAGCGAAAAAGTGCCATTAATGAACGAATGGAGGATCTTGTCAGTGCACCTTTAGCAGTTGAAGATGCCCTTGTGGGCCTCTT TGATCACAGTGATCATACACTTCAAAGGCGGGTTGTCGAAACCTATGTTCGTAGGCTGTACCAGCCTTATCTTGTAAAGGGCAGTGTGAGAATGCAGTGG GATAGATCTGGCCTTATTGCATCATGGGAGTTTGTGGAAGAGCATATTGAGAGAAAGAATGGTTCCGGAGATGAAATGTTTGATAAGCTAATAGTCGAGA AACATTCCGACAGAAAATGGGGAGCCATGGTCATCATCAAATCTCTTCAACTTTTGCCAGCGACTGTCTGTGCTGCATTAAGAGAAAGGTCGAACAACCT TGATGGCTATGGTGAATCAGATGGATTTGGTAATATGATGCATATTGGGTTGGCAGGCATAAACAACCAGATGAGTCTACTGCAGGACAGTGGTGATGAA GATCAAGCGCAGGAAAGAATCAACAAGTTAGCTAAGATACTCAAAGAGGGAGAAAGGGATGAAGGGCGACCACCTATGAGGCACTCCTTCCATTGGTCAG CGGAAAAGAAATATTTTGCTGAAGAACCTTTATTGAGACATCTAGAACCTCCACTTTCAATCTATCTGGAACTGGACAAGCTGAAAGGGTACGGGAATAT ACAATATACTCCGTCACGGGACCGACAATGGCATTTATACACTGTCATTGATAAGCCAGTTCCAATCCAGCGGATGTTTCTTAGATCACTAGTACGGCAA CCAACTTCCACAGATGGATTTACTGCATATCAAGGACTGGGAATGGAGGCATTTCGTACCCAGTCAGGCTTGTCCTTTACATCAAGGAGTATTTTGGGCT CCTTAGTCGCTGCAATGGAGGAGTTAGAACTTAATGTGCATAATGCGACCTTAAAATCTGAGCACGCTCACATGTACCTCTGTATCTTGCGAGAGCAAAA CTTAGAAGATCTTGTGCCTTATCCCAAGGAACTAGAGGACACCTCTAAGCACACAGTGGTTTACGATTCGAGCTCTGCAGAGTGCCCTCTCCAAGGAATA TCTGTGAATGCTGAGTACCCACCATTGGGTTTTCTTGACAGAAAGCGTCTAGTGGCAAGGAGGAGTAGTACCACTTACTGCTATGATTTTCCATTGGCAT TTGAGACATCCTTGAGAGAATTATGGGCCTCCCAGTATCCCGAATTTGCAGTGAGGAAGGATAAAGGTCTTCTCAAAGTAACAGAGCTTGTATTTTCTGA TAAGGAAGGTCTTTGGGGCACTTCCCTGGTTTCTTCTGAACGCCCGACTGGGCTTAATGATGTGGGGATGGTGGCATGGAGCATGGAAATGTCAACTCCT GAATTCCCTGCTGGAAGGACAATAATCATAGTGGCAAATGATGTGACATTTAAAGCTGGATGA
AA sequence Show only first row Show all	>Lus10024748 pacid=23159560 polypeptide=Lus10024748 locus=Lus10024748.g ID=Lus10024748.BGIv1.0 annot-version=v1.0 MVVVGRTNGYLNNTVPMRSSAAAATQVDEFCRALGGNKPIHSILIANNGMAAVKFIRSVRTWAYETFGTEKAILLVAMATPEDMRINAEHIRMADQFVEV PGGTNNNNYANVQLIVEMAEITRVDAVWPGWGHASENPELPDALNAKGIIFLGPSGPSMGALGDKIGSSLIAQAADVPTLPWSGAHVKMSQESSLFTIPD YIYRQACVHTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYSNVAALHSRDCSVQRR HQKIIEEGPITITPLETVKKLEQAARRLAKSVNYVGAATVEYLYSMDTGDYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGV EYSGGYDAWRNTSAFATSFDFDKAESIKPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIA NMVLGLKEIQIRGEIRTNVDYTVDLLHASDYKDNKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAAVVSDYVGYLEKGQIPPKHISLVNSQV SLNIEGSKYTIDMVRGGPGSYRLRMNGSEIEAEIHTLRDGGLLMQASAHLLDGKSHVIYAEEEAAGTRLLIDGRTCLLQNDHDPSKLIAETTCKLLRYLV SDGSHVDADTPYAEVEVMKMCMPLLSPASGIVHFKMSEGQAMQAGELIASLDLDDPSAVRKAEPFHGSFPILGPPTAISGKVHQRCAASVNAARMILAGY YHTIDEVVQNLLNSLDSPELPFLQWQECFAVLANRLPKGLRIELESRYREFEEISRSQTVDFPAKLLRVVLEAHLSSCPDKEKGAQERIVEPLMSLVKSY EGGRESHARLIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLKVVDIVLSHQGVKSKNKLILRLMEQLVYPNPAAYRDKLIRFSQLNHTSYSELA LKASQLLEQTKLSELRSTIARSLSELEMFTEDGENMDTPKRKSAINERMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYVRRLYQPYLVKGSVRMQW DRSGLIASWEFVEEHIERKNGSGDEMFDKLIVEKHSDRKWGAMVIIKSLQLLPATVCAALRERSNNLDGYGESDGFGNMMHIGLAGINNQMSLLQDSGDE DQAQERINKLAKILKEGERDEGRPPMRHSFHWSAEKKYFAEEPLLRHLEPPLSIYLELDKLKGYGNIQYTPSRDRQWHLYTVIDKPVPIQRMFLRSLVRQ PTSTDGFTAYQGLGMEAFRTQSGLSFTSRSILGSLVAAMEELELNVHNATLKSEHAHMYLCILREQNLEDLVPYPKELEDTSKHTVVYDSSSAECPLQGI SVNAEYPPLGFLDRKRLVARRSSTTYCYDFPLAFETSLRELWASQYPEFAVRKDKGLLKVTELVFSDKEGLWGTSLVSSERPTGLNDVGMVAWSMEMSTP EFPAGRTIIIVANDVTFKAG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024748 [exp]	0	1
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10004897 [exp]	1.7	0.9523
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10006934 [exp]	3.0	0.8826
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10032543 [exp]	4.9	0.8969
AT5G36000			unknown protein		Lus10035747 [exp]	5.0	0.8932
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003599 [exp]	5.5	0.9003
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	5.7	0.8824
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036543 [exp]	6.0	0.8902
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10017357 [exp]	6.9	0.8499
					Lus10026434 [exp]	9.4	0.8842
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008040 [exp]	10.2	0.8719

Compare expression of checked genes

Lus10024748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.