Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003831 [exp] 240 / 1e-79 ND / Lus10033051 [exp] 237 / 1e-79 ND / Lus10006395 [exp] 229 / 5e-77 ND / Lus10039395 [exp] 168 / 4e-53 ND / Lus10042590 [exp] 166 / 5e-52 ND / Lus10032910 [exp] 163 / 1e-50 ND / Lus10015895 [exp] 153 / 2e-47 ND / Lus10004816 [exp] 154 / 1e-45 AT5G01470 342 / 6e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10027052 [exp] 145 / 4e-45 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024749 pacid=23159541 polypeptide=Lus10024749 locus=Lus10024749.g ID=Lus10024749.BGIv1.0 annot-version=v1.0 ATGCCGAAATCGGAGAGGAAATATAGGAAAAAGCTACCTGTTAGAGAAGACAAGTCCAAGAGCAAAGCAAAATGCACATATCACAGGGATCCATTTAACA GAGACTTTAGTACTATTGCTGCTGCTTCGAGCCTTCATTGCCAACGGCCACCAGAATTGGATGTCGGTGACGGAATTGATTACTCCGACTGGTTCTTATC CGATGATGTGTACGACACTATCGATGAAGCGGTGCAAGCAGCAAAACAGATTGCTTTGACGCTTAATTTCCATCTGATCAAAGGGTCAAATAAAAGCAAT GACTCGGAAAAGGAGTGTCGGGTGTATCTTTATTGCTCACGTGGACCAGTTCGCAAGTCTGAGGGTTCAGATCCGCCGAAACGTGCTACGAAGTCAAAGA AGTGTAATTTCCCATTCAGACTTGCCGTCCGATCAAAGGTGGTAGATTGTGAGTGGAAGTATTTTATTGACGGAGTCGGAGACATAAAGAACCTTGATAA GTCGAAGGGGTACCACAATCATCCTCAGATTCATTTCACTGAAGTAAAGCACGGAAAGCAATCCGTTATCAGATGA
AA sequence Show only first row Show all	>Lus10024749 pacid=23159541 polypeptide=Lus10024749 locus=Lus10024749.g ID=Lus10024749.BGIv1.0 annot-version=v1.0 MPKSERKYRKKLPVREDKSKSKAKCTYHRDPFNRDFSTIAAASSLHCQRPPELDVGDGIDYSDWFLSDDVYDTIDEAVQAAKQIALTLNFHLIKGSNKSN DSEKECRVYLYCSRGPVRKSEGSDPPKRATKSKKCNFPFRLAVRSKVVDCEWKYFIDGVGDIKNLDKSKGYHNHPQIHFTEVKHGKQSVIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024749 [exp]	0	1
AT2G48030			DNAse I-like superfamily prote...		Lus10029630 [exp]	7.0	0.7333
AT1G68630			PLAC8 family protein (.1)		Lus10008890 [exp]	9.0	0.7073
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10018152 [exp]	13.5	0.6926
					Lus10006458 [exp]	29.0	0.6822
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	40.4	0.6988
AT5G04830			Nuclear transport factor 2 (NT...		Lus10028847 [exp]	41.0	0.6738
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Lus10043383 [exp]	43.5	0.6494
AT4G38790			ER lumen protein retaining rec...		Lus10007570 [exp]	43.6	0.6810
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	44.9	0.6653
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	47.3	0.6902

Compare expression of checked genes

Lus10024749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.