Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77810 600 / 0 Galactosyltransferase family protein (.1.2) AT1G22015 541 / 0 DD46 Galactosyltransferase family protein (.1) AT1G32930 520 / 0 Galactosyltransferase family protein (.1) AT1G05170 511 / 0 Galactosyltransferase family protein (.1.2) AT2G32430 493 / 1e-174 Galactosyltransferase family protein (.1) AT1G33430 488 / 9e-173 Galactosyltransferase family protein (.1.2) AT4G26940 483 / 1e-170 Galactosyltransferase family protein (.1.2) AT1G11730 451 / 2e-158 Galactosyltransferase family protein (.1) AT5G53340 241 / 1e-76 Galactosyltransferase family protein (.1.2) AT4G32120 226 / 5e-71 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006933 [exp] 807 / 0 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 531 / 0 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 529 / 0 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 526 / 0 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10021538 [exp] 495 / 8e-176 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 481 / 2e-169 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 474 / 5e-167 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 470 / 2e-165 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10039657 [exp] 468 / 2e-164 AT1G05170 607 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G089800 [exp] 645 / 0 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 640 / 0 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 529 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 525 / 0 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.002G228900 [exp] 512 / 0 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 499 / 4e-177 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.019G067300 [exp] 494 / 8e-175 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 458 / 5e-161 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 451 / 1e-158 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 261 / 3e-84 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10024750 pacid=23159521 polypeptide=Lus10024750 locus=Lus10024750.g ID=Lus10024750.BGIv1.0 annot-version=v1.0 ATGAAGGCTCGAAGCAGCAGCAATAGTACTAAAGTCTCTGTTAAATGGATCCCTGTGATATGTGCATTTTGCTTTGCTCTTGGACTTGTCTTCTCTAACA GGAATTGGGTACAGTACGAATCCAACGCTCAGCTCATATCCCAGCGCCGAAATGAACAGGAATTGCAGGTGCTATCCGAAGATACCTTCTCGGCCAAGAA GTCTTCCCAAGCTAAAGATGTTATGGATGAAGTTGTTAAGACCCATGATGCCATTCAATCTCTAGACAAGTCAATCGCAGTGCTGCAGATGCAGTTGGCA GCTTCTCGGAGTTCTCAGGAGATGATGAGCTTAGCAGCTGCTACTTCTGTATCCCGTGAAGGCGGCCCCTCAAGGCCTAAAGTGTTCGTGGTTATTGGGA TTAATACGGCGTTTAGCAGCAGAAAGAGGCGCGATTCTGTCAGAGAGACATGGATGCCGCAAGGCGACAAACTTCTGCAACTGGAGAGGGAGAAGGGAAT TGTTATTCGTTTCATGATTGGTCATAGTGCTACGTCCAATAGCATTCTTGACCATGCGATTGATTCTGAAGCTACTCAACATCAAGATTTCCTTAGACTG GAGCATGTGGAAGGATATCATGAACTTTCTGCAAAAACAAAGATTTTCCTTTCCACGGCAGTTGCGGAGTGGGATGCTGAGTTCTATGTTAAGGTCGATG ATGATGTTCATGTCAATCTGGGAATGCTAGCTGCCACCCTCGCTCGTCACCGCTCAAAGCCTAGGGTTTATATTGGGTGCATGAAATCGGGACCTGTTCT TTCTCAGAAGAATGTCAAATATCACGAGCCAGAATCTTGGAAATTTGGAGAAGAAGGGAACAAATACTTTCGACATGCAACAGGACAAATATATGCTGTT TCAAAAGATCTTGCTACATACATCTCTATCAATCAGCGATTACTACATAAATTCGCCAACGAAGATGTATCTCTTGGTTCTTGGTTGATCGGTCTTGAGG TTGAGCACATCGATGATAGGAATATGTGCTGTGGGACTCCACCAGATTGTGAGTGGAAAGCACAGGCGGGGAATGTGTGTGTTGCATCGTTTGACTGGAG CTGCAGCGGAATCTGCAAATCAGTGGAGAAGCTAAAATTTGTCCATGAAAGGTGTGGTGAAGGAGACGGTGCTGTGTGGAGTGCTCTTTTATTATTATGA
AA sequence Show only first row Show all	>Lus10024750 pacid=23159521 polypeptide=Lus10024750 locus=Lus10024750.g ID=Lus10024750.BGIv1.0 annot-version=v1.0 MKARSSSNSTKVSVKWIPVICAFCFALGLVFSNRNWVQYESNAQLISQRRNEQELQVLSEDTFSAKKSSQAKDVMDEVVKTHDAIQSLDKSIAVLQMQLA ASRSSQEMMSLAAATSVSREGGPSRPKVFVVIGINTAFSSRKRRDSVRETWMPQGDKLLQLEREKGIVIRFMIGHSATSNSILDHAIDSEATQHQDFLRL EHVEGYHELSAKTKIFLSTAVAEWDAEFYVKVDDDVHVNLGMLAATLARHRSKPRVYIGCMKSGPVLSQKNVKYHEPESWKFGEEGNKYFRHATGQIYAV SKDLATYISINQRLLHKFANEDVSLGSWLIGLEVEHIDDRNMCCGTPPDCEWKAQAGNVCVASFDWSCSGICKSVEKLKFVHERCGEGDGAVWSALLLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77810			Galactosyltransferase family p...		Lus10024750 [exp]	0	1
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018380 [exp]	5.1	0.7462
AT5G43400			Uncharacterised conserved prot...		Lus10041147 [exp]	6.0	0.7137
AT4G13780			methionine--tRNA ligase, putat...		Lus10010450 [exp]	10.1	0.7342
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018381 [exp]	12.6	0.7173
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10029152 [exp]	13.2	0.7358
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10003769 [exp]	14.0	0.6595
AT1G36320			unknown protein		Lus10036666 [exp]	14.0	0.6644
AT5G04020			calmodulin binding (.1)		Lus10031023 [exp]	26.6	0.6060
AT3G07550			RNI-like superfamily protein (...		Lus10041087 [exp]	32.1	0.6481
AT5G03795			Exostosin family protein (.1)		Lus10039142 [exp]	32.2	0.6432

Compare expression of checked genes

Lus10024750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.