Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30140 54 / 3e-09 unknown protein AT5G27260 43 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037335 [exp] 165 / 1e-50 AT5G27260 69 / 7e-13 unknown protein Lus10035759 [exp] 157 / 2e-47 AT5G27260 74 / 6e-15 unknown protein Lus10012077 [exp] 142 / 4e-42 AT5G27260 50 / 5e-07 unknown protein Lus10014160 [exp] 125 / 8e-36 ND 47 / 6e-06 Lus10032348 [exp] 118 / 1e-32 AT5G27260 52 / 2e-07 unknown protein Lus10000529 [exp] 75 / 3e-17 ND 37 / 0.005 Lus10019607 [exp] 76 / 4e-17 ND / Lus10016300 [exp] 70 / 3e-15 ND / Lus10006591 [exp] 66 / 8e-15 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265900 [exp] 42 / 7e-05 AT2G24960 761 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024751 pacid=23159557 polypeptide=Lus10024751 locus=Lus10024751.g ID=Lus10024751.BGIv1.0 annot-version=v1.0 ATGGAAGATGAGAAACCAGGTTGTGGGGTGCAAGCCAATTCGAACATAATGTCTCGGTACAAATTGTTGAAGTCGAAGTTCTTAGCCATTCAGGAGGTAT GTGGCTTAAGTAGCTCAGGTTGGGATGAGAACGTGAAGTGTGTTATCATGGAGGATACTATGTATGCAGATTATGTGAAGGAATACAAGCATTATGCTAA CTTGAATCGAGTCCCGTTACCATGTTGTGATGGTCTCGAATACATGTTCGACAAGGTACGTGCAACTGGCTCACATGTTGTTGGATTGGAAGAGCTGACA CAGACTATCCCATGTCCAAAAATAGAGGTACCAAGTGTTATGATGTTGGGATGGAAGAAATTGAATGAGCCGAGTGAAAACTCTACAGCTGGTGGTCAAA CTGAGAAAGAAGAGTATGTCGTCATTCATGAAGATGTAAGCCCTACCACTACACCGACGAAGAAGAGGAAAGCTAATGTTTCCGATGCAACTAGCCGATA G
AA sequence Show only first row Show all	>Lus10024751 pacid=23159557 polypeptide=Lus10024751 locus=Lus10024751.g ID=Lus10024751.BGIv1.0 annot-version=v1.0 MEDEKPGCGVQANSNIMSRYKLLKSKFLAIQEVCGLSSSGWDENVKCVIMEDTMYADYVKEYKHYANLNRVPLPCCDGLEYMFDKVRATGSHVVGLEELT QTIPCPKIEVPSVMMLGWKKLNEPSENSTAGGQTEKEEYVVIHEDVSPTTTPTKKRKANVSDATSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30140			unknown protein		Lus10024751 [exp]	0	1
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	1.0	0.9692
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	2.0	0.9564
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009047 [exp]	2.4	0.9497
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10006828 [exp]	3.0	0.9455
					Lus10022017 [exp]	3.2	0.9513
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	3.5	0.9548
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	3.7	0.9406
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	4.0	0.9517
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	4.2	0.9370
AT4G39952			Pentatricopeptide repeat (PPR)...		Lus10010688 [exp]	4.9	0.9320

Compare expression of checked genes

Lus10024751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.