Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77850 463 / 3e-157 ARF ARF17 auxin response factor 17 (.1) AT4G30080 345 / 2e-110 ARF ARF16 auxin response factor 16 (.1) AT2G28350 328 / 8e-104 ARF ARF10 auxin response factor 10 (.1) AT1G59750 208 / 6e-59 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT4G23980 202 / 7e-57 ARF ARF9 auxin response factor 9 (.1.2) AT5G37020 203 / 2e-56 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT2G33860 198 / 2e-55 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G19850 199 / 2e-54 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT2G46530 194 / 4e-54 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 192 / 1e-53 ARF ARF18 auxin response factor 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009770 [exp] 1043 / 0 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10024754 [exp] 1025 / 0 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10026510 [exp] 360 / 6e-116 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 340 / 2e-109 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 340 / 9e-109 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 333 / 4e-106 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 329 / 2e-104 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10016091 [exp] 211 / 2e-63 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10007440 [exp] 201 / 5e-56 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G089900 [exp] 641 / 0 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G171300 [exp] 613 / 0 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.009G014800 [exp] 363 / 6e-117 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.004G211700 [exp] 357 / 1e-114 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.008G039000 [exp] 354 / 2e-113 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.010G223200 [exp] 353 / 4e-113 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.016G090300 [exp] 350 / 6e-112 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.006G127500 [exp] 343 / 2e-109 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.003G001000 [exp] 209 / 4e-59 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.014G100100 [exp] 208 / 8e-59 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10024753 pacid=23159551 polypeptide=Lus10024753 locus=Lus10024753.g ID=Lus10024753.BGIv1.0 annot-version=v1.0 ATGGTCGACCGCCGGATCTGGCAATCCTGTGCTGGTTCCTCCATCCACATCCCTACTCTCAATTCTAGGGTCTATTACTTCCCCCAGGGTCACCTCGAGC AGTCTTCTTCCTCCACTCTACCTTTCCTCTCCTCTCTCGTTTTGTCCCGCCCTATGATCCTCTGCCGCCTTTCCTCCATCCAATTCCTCGCCGATCCTGT CACTGACGAGGTCTACGTCAAGCTTTTTCTCCATCCTCTAGATCCTTCTTCCCTCAATGCTGCTGCGTTGCCTCTTTTGGAGCCCTCTCCTACTGCTGCT TCTGCTGCTGCTGCTAACAATGATGGAATTATGGCCTACGCCAAGGTCTTGACCGCTTCCGATGCCAACAACGGTGGAGGCTTCTCCGTTCCCAGGTTCT GTGCTGACTCCATATTCCCGCCATTGAACTACGACGCCGACCCTCCTGTCCAAACCCTAAGTGTCTCCGACGTCCACGGCATCAAGTGGAATTTCCGCCA CATCTACCGTGGCACTCCCCGCCGCCACTTACTCACCACTGGTTGGAGTAAGTTTGTTAACAGCAAGAAGTTGATCGCTGGTGACTCTGTTTTATTTATG AAGAATTTTAGAGGAGAGATGTTCATCGGAGTCCGCAGGGCTGCTAGGTCTAACAACGCCGCCAATTTCGCGCGGTGGCGGGACGATTTTGGTACTGGAG GAGATGGCAAAGTCAAGCTTAAGGAAGATGGATGCTCTAGGACGAGTGCTAGAGGGATGCTGTCACCGGAGACCGTCGCCGAGGTCACCGAGAGGGCAGC CCAGGGATTGCCATTTGAAGTGGTGTATTACCCCAGGTCATGGTCCTTTTCTGATTTCGTTGTCAATGCTGATGTGGTGGAGGCTGCTCTCAGTATGTTC TGGTCGTCGGGGACCAGAGTTAAGATGGCTGTCGAATCAGAGGACCTCTCAAGGGCTACGTGGTTTCAAGGCACTGTTGCTTCTGCCACAGTTCCAGGTT GTGGACCATGGCAAGGATCTCCTTGGCGCATGCTTCAGATCAAATGGGATGAACCCGAAGTTCTTCAGAGTGCCCAGAGAATTAGCCCATGGCGAGTTGA ATTTGTTTCAACAAATTCATCATTAGGTACTGGGATTCCGCCAGCCAAGAAATTGAGATATCCAGACAAGTCTGAGTTTCTGATAGATGGAGAGAGAGAT CTTCGCTTTCCTTTGTCAGGGCTCGGGAATTCAACAATGGCTCAGATGAATCAGCCGCTGTTGAGTTATAACAATTTTCCTGCTGGCATGCAGGGAGCCA GGCATTATTCTTTCCCCCCCTTTGAATTATCGAACTCTGTGAGTGACAATGGTCTCCAGATAGGTGCTGATACTTGCGTGACAAACATTATGGTGCCTAA GATGAGCAGCGTCTCCACCGAGCTGAATATTGGTAGTTCACAATCTGAAAACTTGTCTCCAGACAGTCAGAGCAGTGTGCAGTCTTTTAGCACTGAACTT GTAGGAAATCAAGGTTGCACATCCAGAAACTGGGGCACTAGTTCGTTTCAGTTATTTGGTAAAATGATTCATATGAATCAGGCAGTTGAAAGAGGTTGTG ATGTAGTGAGCTGCTTGGAGGATGAGAATGCTAAAAAGTGTAAGGATAATCAAGGTGTAAACCAGCTGCTTGACCTGTCGCTGACCTCGTCATATACTGA ACTACTCAACAAAATAGATGTCCAGTGCCAAAGATCTGCAGGTCTTGAGGCATATGAACAATCCATTTTGTGA
AA sequence Show only first row Show all	>Lus10024753 pacid=23159551 polypeptide=Lus10024753 locus=Lus10024753.g ID=Lus10024753.BGIv1.0 annot-version=v1.0 MVDRRIWQSCAGSSIHIPTLNSRVYYFPQGHLEQSSSSTLPFLSSLVLSRPMILCRLSSIQFLADPVTDEVYVKLFLHPLDPSSLNAAALPLLEPSPTAA SAAAANNDGIMAYAKVLTASDANNGGGFSVPRFCADSIFPPLNYDADPPVQTLSVSDVHGIKWNFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVLFM KNFRGEMFIGVRRAARSNNAANFARWRDDFGTGGDGKVKLKEDGCSRTSARGMLSPETVAEVTERAAQGLPFEVVYYPRSWSFSDFVVNADVVEAALSMF WSSGTRVKMAVESEDLSRATWFQGTVASATVPGCGPWQGSPWRMLQIKWDEPEVLQSAQRISPWRVEFVSTNSSLGTGIPPAKKLRYPDKSEFLIDGERD LRFPLSGLGNSTMAQMNQPLLSYNNFPAGMQGARHYSFPPFELSNSVSDNGLQIGADTCVTNIMVPKMSSVSTELNIGSSQSENLSPDSQSSVQSFSTEL VGNQGCTSRNWGTSSFQLFGKMIHMNQAVERGCDVVSCLEDENAKKCKDNQGVNQLLDLSLTSSYTELLNKIDVQCQRSAGLEAYEQSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10024753 [exp]	0	1
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10024668 [exp]	3.9	0.7766
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10024754 [exp]	15.7	0.7055
AT5G44090			Calcium-binding EF-hand family...		Lus10022907 [exp]	16.9	0.7773
					Lus10012234 [exp]	19.8	0.6623
AT3G26730			RING/U-box superfamily protein...		Lus10035163 [exp]	28.9	0.7458
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	29.8	0.7527
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10032777 [exp]	35.2	0.7346
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10000184 [exp]	36.4	0.7038
AT1G12450			SNARE associated Golgi protein...		Lus10007018 [exp]	40.6	0.7464
AT5G06820		SRF2	STRUBBELIG-receptor family 2 (...		Lus10016276 [exp]	43.9	0.6530

Compare expression of checked genes

Lus10024753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.