Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77850 480 / 6e-164 ARF ARF17 auxin response factor 17 (.1) AT4G30080 358 / 2e-115 ARF ARF16 auxin response factor 16 (.1) AT2G28350 343 / 2e-109 ARF ARF10 auxin response factor 10 (.1) AT1G59750 213 / 9e-61 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT4G23980 209 / 3e-59 ARF ARF9 auxin response factor 9 (.1.2) AT5G37020 208 / 3e-58 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT2G33860 203 / 2e-57 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G19850 207 / 3e-57 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT2G46530 202 / 5e-57 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 202 / 5e-57 ARF ARF18 auxin response factor 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024753 [exp] 1066 / 0 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10009770 [exp] 1042 / 0 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10026510 [exp] 374 / 2e-121 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 356 / 2e-115 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 355 / 3e-114 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 346 / 3e-111 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 335 / 2e-106 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10016091 [exp] 218 / 3e-66 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10023058 [exp] 209 / 3e-59 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G089900 [exp] 655 / 0 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G171300 [exp] 638 / 0 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.009G014800 [exp] 367 / 8e-119 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.008G039000 [exp] 367 / 2e-118 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.004G211700 [exp] 367 / 2e-118 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.016G090300 [exp] 363 / 6e-117 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.006G127500 [exp] 361 / 4e-116 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.010G223200 [exp] 360 / 1e-115 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.014G100100 [exp] 218 / 3e-62 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.003G001000 [exp] 216 / 9e-62 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10024754 pacid=23159532 polypeptide=Lus10024754 locus=Lus10024754.g ID=Lus10024754.BGIv1.0 annot-version=v1.0 ATGGTCGACCGCCGGATCTGGCAATCCTGTGCTGGTTCCTCCATCCACATCCCTACTCTCAATTCTAGGGTCTATTACTTCCCCCAGGGTCACCTCGAGC AGTCTTCTTCCTCCACTCTACCTTTCCTCTCCTCTCTCGTTTTGTCCCGCCCTATGATCCTCTGCCGCCTTTCCTCCATCCAATTCCTCGCCGATCCTGT CACTGACGAGGTCTACGTCAAGCTTTTTCTCCATCCTCTAGATCCTTCTTCCCTCAATGCTGCTGCGTTGCCTCTTTTGGAGCCCTCTCCTACTGCTGCT TCTGCTGCTGCTGCTAACAATGATGGAATTATGGCCTACGCCAAGGTCTTGACCGCTTCCGATGCCAACAATGGTGGAGGGTTCTCCGTTCCCAGGTTCT GTGCTGACTCTATATTCCCGCCATTGAACTACGAAGCCGACCCTCCAGTCCAAACCCTAAGTGTCTCCGACGTCCACGGCATCAGGTGGGATTTCCGTCA CATCTACCGTGGCACTCCCCGCCGCCACCTACTCACTACTGGATGGAGTAAGTTTGTTAACAGCAAGAAGTTGATCGCTGGTGACTCTGTTTTATTCATG AAGAATTGTAGAGGAGAGATGTTCATCGGAGTCCGCAGGGTGGCTAGGTCTAATAACGCCGCCAATTTCGCGCGGTGGCGGGACGATTTTGGTACTGGAG GAGATGGCAAAGTCAAGCTTAAGGAAGATGGATGCTCTAGGACGAGTGCTAAAGGGATGCTGTCACCGGAGACCGTCGCAGATGTCACCGAGAGGGCAGC CCAGGGATTGCCATTTGAAGTGGTGTATTACCCCAGATCATGGTCCTTTTCTGATTTCGTTGTCAACGCTGATGTGGTGGAGGCTGCTCTCAGTATGTTT TGGTCGTCGGGGACCAGAGTTAAGATGGCTGTCGAATCAGAGGACCTCTCAAGGGCTACGTGGTTTCAAGGCACTGTTGCTTCAGCCACGGTTCCAGGTT GCGGACCATGGCAAGGATCTCCTTGGCGCATGCTTCAGATCAAATGGGATGAACCCGAAGTTCTTCAGAGTGCCCAGAGAATCAGCCCATGGCGAGTTGA ATTTGTTTCAACAAATTCATCATTAGGTACTGGGATTCCGCCAGCCAAGAAATTGAGATATCCAGACAAGTCTGAGTTTCTGATTGACGGAGAGAGAGAT ATTCGCTTTCCTTTGTCAGGGCTAGCGAATTCAACAATGGCTCAGATGAATCAGCCGCTGTTGAGTTATAACAATTTTCCTGCTGGCATGCAGGGAGCCA GGCATTATTCTTTCCCCACCTTTGAATTATCGAACTCTGTGGGTGACAATGTTCTCCAGATAGGTGCTGATACTTGCGTGACAAACATTATGGTACCTAA GAGGAGCAGCGTCTCCACTGAGCTGAATATTGGTAGTTCGCAATCTGAAAACTTGTCTCCAGACAGTCAGAGCAGTGTGCAGTCTTTTAGCACTGAACTT GTAGGAAATCAAGGTTGCACATCCAGAAACTGGGGCACTAGTTCGTTTCAGTTATTTGGTAAAATGATTCATATGAATCAGCCAGTTGAAAGAGGTTCTT CTGATGTAGTAAGCTGCTTGGAGGATGAGAATGCTAAAAAGTGTAAGGACAATCAAGGTGTAAACCAGCTGCTTGACCTGTCGCTGACCTCATCTTATAG TGAACTACTCAACAAAATAGATGTCCAGTGCCAAAGATCTGGAGGTCTTGAGGCATATGAACAATCCATTGTGTGA
AA sequence Show only first row Show all	>Lus10024754 pacid=23159532 polypeptide=Lus10024754 locus=Lus10024754.g ID=Lus10024754.BGIv1.0 annot-version=v1.0 MVDRRIWQSCAGSSIHIPTLNSRVYYFPQGHLEQSSSSTLPFLSSLVLSRPMILCRLSSIQFLADPVTDEVYVKLFLHPLDPSSLNAAALPLLEPSPTAA SAAAANNDGIMAYAKVLTASDANNGGGFSVPRFCADSIFPPLNYEADPPVQTLSVSDVHGIRWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVLFM KNCRGEMFIGVRRVARSNNAANFARWRDDFGTGGDGKVKLKEDGCSRTSAKGMLSPETVADVTERAAQGLPFEVVYYPRSWSFSDFVVNADVVEAALSMF WSSGTRVKMAVESEDLSRATWFQGTVASATVPGCGPWQGSPWRMLQIKWDEPEVLQSAQRISPWRVEFVSTNSSLGTGIPPAKKLRYPDKSEFLIDGERD IRFPLSGLANSTMAQMNQPLLSYNNFPAGMQGARHYSFPTFELSNSVGDNVLQIGADTCVTNIMVPKRSSVSTELNIGSSQSENLSPDSQSSVQSFSTEL VGNQGCTSRNWGTSSFQLFGKMIHMNQPVERGSSDVVSCLEDENAKKCKDNQGVNQLLDLSLTSSYSELLNKIDVQCQRSGGLEAYEQSIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10024754 [exp]	0	1
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10012484 [exp]	8.2	0.7409
AT3G22550			Protein of unknown function (D...		Lus10042606 [exp]	9.4	0.7814
AT1G11160			Transducin/WD40 repeat-like su...		Lus10041006 [exp]	9.9	0.7026
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10024753 [exp]	15.7	0.7055
AT5G48970			Mitochondrial substrate carrie...		Lus10006521 [exp]	41.6	0.6870
					Lus10012234 [exp]	41.7	0.6085
AT2G39805			Integral membrane Yip1 family ...		Lus10030159 [exp]	42.7	0.6816
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032550 [exp]	51.2	0.6995
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	52.1	0.6971
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	65.1	0.6767

Compare expression of checked genes

Lus10024754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.